Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0642
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 226 VRPSRLVHMYGINK*PRHSNNK 291
           V  SR  H+ G+N  PRH+ NK
Sbjct: 280 VPQSRTEHISGLNSPPRHTGNK 301


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 18  KQFIQTAANTITHKLLSEQLSQLCTCTY-VDPFRVR 122
           K+F    AN+I H +L++Q+ ++ T  + V+ F+++
Sbjct: 299 KRFSYFVANSIAHAILAKQIEEVRTRIHMVEEFKIQ 334


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 18  KQFIQTAANTITHKLLSEQLSQLCTCTY-VDPFRVR 122
           K+F    AN+I H +L++Q+ ++ T  + V+ F+++
Sbjct: 302 KRFSYFVANSIAHAILAKQIEEVRTRIHMVEEFKIQ 337


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 18  KQFIQTAANTITHKLLSEQLSQLCTCTY-VDPFRVR 122
           K+F    AN+I H +L++Q+ ++ T  + V+ F+++
Sbjct: 302 KRFSYFVANSIAHAILAKQIEEVRTRIHMVEEFKIQ 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,780,417
Number of Sequences: 27780
Number of extensions: 89399
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)