Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0642
         (304 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   2.4  
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    27   3.2  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    27   3.2  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    27   3.2  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    27   3.2  
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont...    26   5.6  

>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
           contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 186 LHDAPTSACAKRLSYPCLRRQSEP 115
           +H+ P   C   ++ PCLR + +P
Sbjct: 676 IHEPPPPGCESNINMPCLRYKYQP 699


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 12  QQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCVN 137
           QQ+QF+   +    H+L S+QL QL T +    F   S C N
Sbjct: 762 QQQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF--PSSCTN 801


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 12  QQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCVN 137
           QQ+QF+   +    H+L S+QL QL T +    F   S C N
Sbjct: 761 QQQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF--PSSCTN 800


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 12  QQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCVN 137
           QQ+QF+   +    H+L S+QL QL T +    F   S C N
Sbjct: 762 QQQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF--PSSCTN 801


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 234 RSHVSRCDNIKMR*S*LHDAPTSACAKRLS 145
           R+ + RCDN     S L+D  TS C+ R+S
Sbjct: 105 RALLKRCDNADAVSSCLNDDLTSVCSSRIS 134


>At3g15410.1 68416.m01955 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596;
           identical to leucine-rich repeat protein [Arabidopsis
           thaliana] gi|2760084|emb|CAA76000
          Length = 584

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 273 WLLINTIHMNEAGRSHVSRCDNIKMR*S*LHDAPTSACAKRLSYPCLRRQS 121
           +L IN++    A    +SR   + +R + L + P  AC  +LSY  L   S
Sbjct: 236 YLGINSLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNS 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,408,181
Number of Sequences: 28952
Number of extensions: 82175
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)