Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0641
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 31 1.5
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 30 2.7
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 30 2.7
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 29 4.6
01_01_0978 + 7738232-7740848,7740929-7741320 29 4.6
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188... 29 6.1
11_06_0704 - 26450916-26451128,26451439-26451831 28 8.1
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 28 8.1
02_02_0727 + 13409441-13409752 28 8.1
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 260 KATELFRSSNISNDILKQIMDISVSPNNCATLNHMNRKQFYSALKLIAAHQTNIALKPDL 439
+A LF S + +ILKQ+ D+S N+ ++ ++F AL L+ H+ L P L
Sbjct: 459 EARTLFLSWRLPREILKQVWDLSDQDND----GMLSLREFCIALYLMERHRAGTPLPPAL 514
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 687 ESGTMSPRSGIAWSESENWGXLEHSGESPTPNQQRCR---KGSSRFGDH 824
+ GT + R+G +S NWG +H + P Q+ + GS+ G H
Sbjct: 561 QGGTSTSRTGFMDRQSNNWGSTDHDKPAFQPFTQKAKTYQHGSNGSGHH 609
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 260 KATELFRSSNISNDILKQIMDISVSPNNCATLNHMNRKQFYSALKLIAAHQTNIALKPDL 439
+A F++S + +L QI + N L R+ FY+AL+L+ Q+ L PD+
Sbjct: 24 EAVAFFKASALPQPVLAQIWTYA-DKNRTGFLG---REDFYNALRLVTVAQSGRELTPDI 79
Query: 440 YQLLL 454
+ L
Sbjct: 80 VRSAL 84
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 349 CTVVRRHAYIHDLFQNIIGYVRRSK*FCCF*NGIFPLDSSSQHKNKSP 206
C++ +R YIHDLFQ G+ ++ + PL Q K P
Sbjct: 1104 CSLRQRRKYIHDLFQEKPGHFELAQQLTYDTRNVAPLSVKQQIHGKCP 1151
>01_01_0978 + 7738232-7740848,7740929-7741320
Length = 1002
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 534 EHHISKRERXFVGNISAYEPIRLSSNLSDSDXPADIVS*WGMKHSVLILELE----SGTM 701
++ +S R +G +RLS+N D D PA + WG+ H + +LEL +G +
Sbjct: 392 DNKLSGRIPDGLGRCRRLRRVRLSNNRLDGDVPAAV---WGLPH-MSLLELNDNQLTGVI 447
Query: 702 SPRSG 716
SP G
Sbjct: 448 SPVIG 452
>03_02_0768 +
11015855-11016063,11016285-11016359,11018296-11018833,
11019356-11020465
Length = 643
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +2
Query: 248 NTILKATELFRSSNISNDILKQIMDISVSPN----NCATLNHMNRKQFYSALKLIAAHQT 415
+TI+KA +I + + K + D S++PN N + + K+++A
Sbjct: 364 STIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLD 423
Query: 416 NIALKPDLYQLLLIFHFRGSRGHL 487
+ KPD++ + +I G+RG +
Sbjct: 424 STTSKPDVWTMNIILSLFGNRGQI 447
>11_06_0704 - 26450916-26451128,26451439-26451831
Length = 201
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 740 LGSPGAQR*KPNPQPTALQKGVLPVWG 820
+G+ G+ P+P P+ L GVLP WG
Sbjct: 1 MGAVGSGGPWPDPPPSWLDDGVLPRWG 27
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 835 RWXLWSPNREDPFLQRCWLGVGLSP 761
R LWS + DP LQRC+L L P
Sbjct: 433 RALLWSYQKLDPCLQRCFLYCSLFP 457
>02_02_0727 + 13409441-13409752
Length = 103
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 724 GPRVKTGVXWSTAVKAQPPTNSVAERGPP 810
GP + TG W T++ P + ERGPP
Sbjct: 18 GPALATG--WKTSLALTPTEDPTGERGPP 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,718,282
Number of Sequences: 37544
Number of extensions: 430864
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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