Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0641
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)                  30   2.0  
SB_128| Best HMM Match : SH3BP5 (HMM E-Value=3.3)                      30   2.7  
SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)                     29   4.7  
SB_52075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_29756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)
          Length = 200

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
 Frame = +2

Query: 245 ENTILKATELFRSSNISNDILKQIMDI--SVSPNNCATL---NHMNRK--QFYSALKLIA 403
           ++ ++ A++ F ++ +S D  +QI  I  S SP N A +   + +N +  + YS+ K+  
Sbjct: 78  QSALVNASK-FDANKLSEDTKRQIKLIAASASPKNPADIKRKSELNSQMDKIYSSGKVKD 136

Query: 404 AHQTNIALKPDLYQLL 451
           A+   ++L PDLY++L
Sbjct: 137 ANGEMLSLNPDLYKIL 152


>SB_128| Best HMM Match : SH3BP5 (HMM E-Value=3.3)
          Length = 410

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 660 KHSVLILELESGTMSPRSGIAWSESENWGXLEHSGESPTPNQQRCRKGSSR 812
           K S+L++E     + P   I + E      ++  G+S TP     +KG S+
Sbjct: 134 KDSLLLIEQNRTALQPPGDIEFEEFGKAQTIQRPGQSTTPKDSNKKKGKSK 184


>SB_8945| Best HMM Match : ABC-3 (HMM E-Value=0.26)
          Length = 555

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -2

Query: 408 CAAINLSAE*NCFLFI*FNVAQLLGDTLISMICFRISLDMFDDLNSSVAFKMVFSH*ILH 229
           CA + L A+ +  LFI F V+ LL   L   I    S++ F  +N + A  M  S  +L 
Sbjct: 317 CAEVGLQAQESSNLFIVFGVSSLLSSLLSGRILDLPSVNPF-HVNQAAALTMALSMLLLQ 375

Query: 228 HNIKTNH 208
              +  H
Sbjct: 376 QATRYLH 382


>SB_52075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 368 RKQFYSALKLIAAHQTNIALKP-DLYQLLLIFHFRGSRGHLTQKLILINTVV 520
           RK+F  AL   A  +TN ++KP +++  +  FH R  R   + K +  N  V
Sbjct: 56  RKEFLRALLRSAERRTNDSIKPSNIFDKVEFFHSRERRAADSNKTVTQNQTV 107


>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +2

Query: 260 KATELFRSSNISNDILKQIMDISVSPNNC-----ATLNHMNRK--QFYSALKLIAAHQTN 418
           K  + F  + +SND  +QI  ++ + ++       TLN +  K  Q Y + K+I    + 
Sbjct: 81  KKAKKFDLTKLSNDTRRQIKMVTETASSSDKDVQKTLNDVEGKMDQIYGSGKVIDTDGSK 140

Query: 419 IALKPDLYQLL 451
           ++L P LY++L
Sbjct: 141 LSLDPHLYKIL 151


>SB_29756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 323 ISVSPNNCATLNHMNRKQFYSALKLIAAHQTNIALKPDLY 442
           +SV+   C T  H    + +SAL L+    TN AL P LY
Sbjct: 327 LSVTMATCYTCTHAVSSELFSALLLLG--YTNSALNPFLY 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,407,534
Number of Sequences: 59808
Number of extensions: 497875
Number of successful extensions: 899
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)