Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0641
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20760.1 68414.m02600 calcium-binding EF hand family protein ...    32   0.41 
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    32   0.55 
At2g13630.1 68415.m01502 F-box family protein-related contains T...    31   1.3  
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    31   1.3  
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont...    29   5.1  
At5g55690.1 68418.m06943 MADS-box protein (AGL47)                      28   6.8  
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ...    28   8.9  

>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 1019

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +2

Query: 260 KATELFRSSNISNDILKQIMDISVSPNNCATLNHMNRKQFYSALKLIAAHQTNIALKPDL 439
           +A   F+ S +S  +L QI  +S   ++      ++R+ FY++L+L+   Q+   L P++
Sbjct: 30  EAVGFFQGSGLSKQVLAQIWSLSDRSHS----GFLDRQNFYNSLRLVTVAQSKRDLTPEI 85

Query: 440 YQLLL 454
               L
Sbjct: 86  VNAAL 90


>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 684 LESGTMSPRSGIAWSESENWGXLEHSGESPTPNQQRCRKGS 806
           + S + S  +  + S + +W  L   GE PTPNQ +   G+
Sbjct: 99  VSSASSSSAASSSTSSAASWAILRSDGEDPTPNQNQYASGN 139


>At2g13630.1 68415.m01502 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           similar to F-box protein Fbx8 (GI:6164735) [Homo
           sapiens]
          Length = 297

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 768 FHRCAPGDPSFHSRTTRSQILGTXFXTPI 682
           FH C+  DPSF+ RT  S  LG  F  P+
Sbjct: 6   FHSCSQEDPSFNHRTMNSD-LGYLFSPPV 33


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 260 KATELFRSSNISNDILKQIMDISVSPNNCATLNHMNRKQFYSALKLIAAHQTNIALKPDL 439
           +A   F+ SN+   +L Q+   + S        ++ R +FY+ALKL+   Q+   L  ++
Sbjct: 32  EAVAFFQGSNLPKHVLAQVWSYADSKK----AGYLGRAEFYNALKLVTVAQSRRELTAEI 87


>At4g36180.1 68417.m05148 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 1136

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 27/82 (32%), Positives = 38/82 (46%)
 Frame = +3

Query: 516 LSNSPKEHHISKRERXFVGNISAYEPIRLSSNLSDSDXPADIVS*WGMKHSVLILELESG 695
           +S S  ++HIS      +GN SA E + L SN      PAD+     +K   L     SG
Sbjct: 575 VSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSG 634

Query: 696 TMSPRSGIAWSESENWGXLEHS 761
            + P   I+ S S N   L+H+
Sbjct: 635 EIPPE--ISQSSSLNSLSLDHN 654


>At5g55690.1 68418.m06943 MADS-box protein (AGL47) 
          Length = 277

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 831 GHYGPQTGRTPFCNAVGWGLG 769
           G YGP   RT +   + WGLG
Sbjct: 226 GPYGPMVQRTAYMEPIHWGLG 246


>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427
           (mitochondrial carrier superfamily); contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 479

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 192 ETRYFGDLFLCCDEESNGKIPF*KQQNYLDRR 287
           E +Y  DLF  CD   +G++ + + + Y+D +
Sbjct: 70  EYKYARDLFRVCDANRDGRVDYQEFRRYIDAK 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,887,361
Number of Sequences: 28952
Number of extensions: 361684
Number of successful extensions: 760
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)