Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0640
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    29   0.49 
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    26   3.5  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    26   4.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.0  

>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 178 NEKECGFG----LLKDGCQLRKTPESLYSTVSRKFDSSPAESTPRLQEKNPLSGQKTLSK 345
           + ++CG      +L +  Q+++ P+S  +T  R  +++P  S    + K  LSG+ ++  
Sbjct: 101 SSQDCGHSRLAQILSEENQIKRLPQSDNTTTERIIENNPNYSNKPSKLKRALSGENSVFS 160

Query: 346 RRRKRTNSERHRELRFP 396
             ++ T S      R P
Sbjct: 161 IHQRNTLSPSSNLPRIP 177


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/53 (20%), Positives = 28/53 (52%)
 Frame = +1

Query: 232 TPESLYSTVSRKFDSSPAESTPRLQEKNPLSGQKTLSKRRRKRTNSERHRELR 390
           TPE   + ++ K    P    P L  +     +++++ ++RK+ +S+  ++L+
Sbjct: 31  TPEEAKNVINEKIAFKPLLLVPSLNLEKQGDRKESVASKKRKKLSSKEKKKLQ 83


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 214 GCQLRKTPESLYSTVSRKFDSSPAESTPRLQEKNPLSGQK 333
           G  L  TP    ++ S    SSP +S+P  Q   P S  K
Sbjct: 269 GSPLSVTPFLQKTSTSIGLSSSPPQSSPSAQSSQPFSRDK 308


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +2

Query: 371 NGIENFDSH*AEAHGDVRXEPASPQRTSLSKRNQLEPLLYN----SYSQMISLVSPYFNI 538
           N + N+DS+       +   P+SP ++         PLL      +YSQ  S VS    +
Sbjct: 396 NSVLNYDSNNFSGTPQINVVPSSPSKSQSGPSLPANPLLQTDISITYSQSASPVSGQPAM 455

Query: 539 DVSQIDLR 562
           + +  DL+
Sbjct: 456 NENSYDLQ 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,105
Number of Sequences: 5004
Number of extensions: 41061
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)