Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0640
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304...    31   0.50 
05_04_0229 + 19235663-19236166                                         28   6.2  
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    27   8.2  
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    27   8.2  
03_01_0487 - 3704763-3705416                                           27   8.2  

>10_08_0943 +
           21728294-21728675,21728767-21728840,21729469-21730443,
           21730617-21730683,21730765-21730827,21731001-21731064,
           21731162-21731255,21731352-21731435,21731523-21731612,
           21731708-21731735,21732117-21732596,21732679-21732740,
           21732820-21732929,21733014-21733101,21733228-21733557,
           21733782-21733904
          Length = 1037

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +1

Query: 253 TVSRKFD--SSPA-ESTPRLQEKNPLSGQKTLSKRRRKRTN 366
           T+SR  D  S PA +STP +Q K P++  K L   +RKR+N
Sbjct: 645 TISRGKDTISQPALKSTPVVQAKEPVADSKQLLGSKRKRSN 685


>05_04_0229 + 19235663-19236166
          Length = 167

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 266 FLDTVE*RLSGVFLSW-QPSFSRPKPHS 186
           F+D +   L G+FLSW QP    PKP++
Sbjct: 124 FMDRLVLDLRGIFLSWDQPIAPTPKPNT 151


>12_02_0133 -
           14057469-14057497,14057516-14057581,14057770-14058363,
           14058450-14058570,14058926-14059320,14059410-14059534,
           14059646-14059876,14060012-14060484,14060587-14060693,
           14060842-14061172,14061222-14061250,14061345-14061901,
           14062170-14062255,14062344-14062406,14062646-14063001,
           14063101-14063356
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 160 PGRSTTNEKECGFGLLKDGCQLRKTPESLYSTVSRKFDSSPAESTPRLQEKN 315
           PG +T +  E   G+L  G Q ++  E+ +ST     D     +   + E+N
Sbjct: 573 PGSTTVSSAEKSSGILGSGAQRKRCNEAGHSTQFCSVDKLSLSAVKPMSERN 624


>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 262 RKFDSSPAESTPRLQEKNPL---SGQKTLSKRRRKRTNSERHR 381
           R++D S  ES     +K        +K L K  R+R   ERHR
Sbjct: 208 RRYDDSSDESNSESDDKESKRRRKEEKRLRKEERRRRREERHR 250


>03_01_0487 - 3704763-3705416
          Length = 217

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +1

Query: 250 STVSRKFDSS-PAESTPRLQEKNP-----LSGQKTLSKRRRKRTNSERHRELRF 393
           +T S   +SS P  +T R QEK P     LS       RR  RTN +    LRF
Sbjct: 49  NTSSHGSESSIPCPTTTRQQEKQPLNIEELSDSSEEGVRRAPRTNWKEEENLRF 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,025
Number of Sequences: 37544
Number of extensions: 282177
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)