Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0640
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32410.1 68416.m04144 transcriptional repressor-related conta...    29   1.7  
At1g25420.3 68414.m03157 expressed protein  contains Pfam profil...    29   1.7  
At1g25420.2 68414.m03156 expressed protein  contains Pfam profil...    29   1.7  
At1g25420.1 68414.m03155 expressed protein  contains Pfam profil...    29   1.7  
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    28   3.9  
At5g41810.1 68418.m05090 expressed protein                             28   5.2  
At5g01400.1 68418.m00053 expressed protein contains low similari...    28   5.2  
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    28   5.2  
At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /...    27   9.0  
At4g30150.1 68417.m04287 expressed protein                             27   9.0  
At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase NAD-bi...    27   9.0  

>At3g32410.1 68416.m04144 transcriptional repressor-related contains
           weak similarity to Swiss-Prot:Q9Y4X4 krueppel-like
           factor 12 (Transcriptional repressor AP-2rep) (HSPC122)
           [Homo sapiens]
          Length = 232

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 223 LRKTPESLYSTVSRKFDSSPAESTPRLQEKNPLSGQKTLSKRRRKRTNSERHRELRF 393
           L K  E     +S    SSP  S+P  +EK+ +S  K+ +         +  R LRF
Sbjct: 67  LEKVKEKTKLMISENIVSSPDTSSPEWKEKDTMSSHKSYADPNSILKKVDESRGLRF 123


>At1g25420.3 68414.m03157 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 255

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 250 STVSRKFDSSPAESTPR---LQEKNPLSGQKTLSK 345
           S+VSR+ +S PAE+T R   LQ +NP+S     SK
Sbjct: 157 SSVSREVESLPAEATQRFQKLQAQNPVSKSMPSSK 191


>At1g25420.2 68414.m03156 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 255

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 250 STVSRKFDSSPAESTPR---LQEKNPLSGQKTLSK 345
           S+VSR+ +S PAE+T R   LQ +NP+S     SK
Sbjct: 157 SSVSREVESLPAEATQRFQKLQAQNPVSKSMPSSK 191


>At1g25420.1 68414.m03155 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 323

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 250 STVSRKFDSSPAESTPR---LQEKNPLSGQKTLSK 345
           S+VSR+ +S PAE+T R   LQ +NP+S     SK
Sbjct: 225 SSVSREVESLPAEATQRFQKLQAQNPVSKSMPSSK 259


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 202 LLKDGCQLRKTPESLYSTVSRKFDSSPAESTPRLQEKNPLSGQKTLSKRRRKRTNSERHR 381
           +L D  QL K   S  + +  ++ +   ES    QEKN L  +KT  K   +  N +  +
Sbjct: 44  ILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQ 103

Query: 382 ELR 390
            LR
Sbjct: 104 RLR 106


>At5g41810.1 68418.m05090 expressed protein
          Length = 288

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 256 VSRKFDSSPAESTPRLQEKNPLSGQKTLSKRRRKRTNS 369
           + +KF S   E+T + +EK   +    LS  + K+T+S
Sbjct: 83  IDQKFTSQNEENTKKEEEKKKETNNNNLSNMKHKKTSS 120


>At5g01400.1 68418.m00053 expressed protein contains low similarity
           to symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 160 PGRSTTNEKECGFGLLKDGCQLRKTPESLYSTVSRKFDSSPAESTPRLQEKNPLSGQKTL 339
           P R T+  KE     ++ G Q  K  +  Y T     D    E T    E+NPL     +
Sbjct: 291 PDRLTSALKE-----IEGGGQAAKAKDLFYKTNGSIQDKDSVEDTKVSVEENPLCASSDV 345

Query: 340 --SKRRRKRTNSERHREL 387
             S   RKR+ SE + +L
Sbjct: 346 AESNLSRKRSGSEYNIDL 363


>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 220 QLRKTPESLYSTVSRKFDSSPAESTPRLQEKNPLSGQKTLSKRRRKRTNSERHRELR 390
           +L+KT     STV RKFD     +T R+  +    G    S   R R+ S   +  R
Sbjct: 511 RLKKTVAQNRSTVPRKFDKDKKYTTKRMGRELSAMGLDPSSAMDRARSKSRGRKRDR 567


>At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Persea americana] GI:166951; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 381

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 298 SVCFQLGSNQTFSIPSNKDFL 236
           ++C   G+++TF IPSNK FL
Sbjct: 49  AMCGSGGNSKTFIIPSNKTFL 69


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 265 KFDSSPAESTPRLQEKNPLSGQKTLSKRRRKRTNSERHRELRF 393
           +FD SP E      E+ P +G K  S   +KR  ++++ E +F
Sbjct: 25  QFDDSPVEVVETKAEELPRTGSKK-SNPSKKRKQTKKNSETQF 66


>At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein low similarity to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 343

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 313 SSPEVSVCFQLGSNQTFSIPSNKDFLGSFSVG 218
           S P++ + +++ S+   + PS +D LG+ S+G
Sbjct: 24  SKPQICLAYRVYSSLQSTTPSTRDELGTVSIG 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,756
Number of Sequences: 28952
Number of extensions: 224603
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)