Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0639
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.3  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   5.8  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    26   7.7  

>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 311 LSLSNTIIAHKSRESILLSRGPCV*IDPLFVL 216
           + LSN II H+  E ++LS   CV +  L +L
Sbjct: 193 VGLSNRIITHRELEMVILSTSLCVQLSLLNLL 224


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 170 TLANNRPKI*ACISNEGQTKDRFIHTAHAI 259
           T+ N    I   I+N+G T +R IH  HA+
Sbjct: 464 TIRNGLTPIIFVINNKGYTIERLIHGLHAV 493


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 529 HV-GIPMTNLRDLLCPGD*YTADQQCFLNCV 440
           HV G P       L PGD  T DQ+  +NCV
Sbjct: 124 HVNGKPERRAYRQLLPGDLVTVDQKSVMNCV 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,335
Number of Sequences: 5004
Number of extensions: 69840
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)