Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0639
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08430.1 68414.m00932 expressed protein contains Pfam profile...    32   0.55 
At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein SP:Q9L...    31   0.73 
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    29   3.9  
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    28   6.8  
At2g47420.1 68415.m05919 dimethyladenosine transferase, putative...    28   9.0  

>At1g08430.1 68414.m00932 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 493

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 28/106 (26%), Positives = 44/106 (41%)
 Frame = +1

Query: 139 SQTVHHIENRNTSKQQAKDISMY**RRTNKGSIYTHGPRDSKMDSRDLCAMMVFDNDRHY 318
           S++VH + +    K + +   +Y   +++ GSI    P DS  D   +  +   DNDR  
Sbjct: 389 SESVHELASAARFKNKMRPTVLY--EKSDSGSIGRAMPIDSHEDHHVVTVLHDVDNDRSN 446

Query: 319 QGQDA*TQEREQGDSCGACHVKITSTHSTLHHLIPTVCIQEHNLGN 456
              D  ++     DSC    +KI   +S  H       I  H L N
Sbjct: 447 NVDD--SRGGSSQDSCHHVAIKIVDDNSN-HEKHEDGEIHVHTLSN 489


>At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein
           SP:Q9LXX5; PMID:11719511;  F22K20.16 - Arabidopsis
           thaliana, EMBL:AC002291;
          Length = 262

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 576 PALKKGQVSPLQYYLPPPAWCRKTVTEVTAKMQCELSPSKXW 701
           PAL+ G V P Q+ L PP W +  +  + +   C+   ++ W
Sbjct: 96  PALRAGNVQPYQFVL-PPNWKQLRIANILSGNYCQPKCAEPW 136


>At3g62700.1 68416.m07043 glutathione-conjugate transporter, putative
            similar to glutathione-conjugate transporter AtMRP4
            GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 349  LSLVFTHPALDSVCRYQTPSSHINLVSPFYYR-VGRVYKSILCLSFVTNTCLYLWPVV 179
            +S   T P+   + R  T  +++++  PF    V  +Y ++L +  VT  C Y WP V
Sbjct: 1064 MSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVT--CQYAWPTV 1119


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 561 YYAAFPALKKGQVSPLQYYLPPPA 632
           Y   +P     Q SP+Q+Y PPPA
Sbjct: 404 YQQQYPPNHHHQPSPMQHYAPPPA 427


>At2g47420.1 68415.m05919 dimethyladenosine transferase, putative
           similar to SP|P41819 Dimethyladenosine transferase (EC
           2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) {Saccharomyces cerevisiae};
           contains Pfam profile PF00398: ribosomal RNA adenine
           dimethylase family protein
          Length = 353

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 757 PVVRSCVVLFPQTXYSLKLXSLDGDNSHCILAVTS 653
           P    C V+  Q  ++++L +  GDN +C L+V +
Sbjct: 143 PTSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNT 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,795
Number of Sequences: 28952
Number of extensions: 371419
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)