Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0638
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     31   0.69 
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617     29   3.7  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    29   3.7  
05_05_0251 + 23616546-23617760                                         29   4.9  
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194...    28   6.4  

>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 12/35 (34%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = -1

Query: 599 DPQVEVWV-KVEELIVGLVVQAEGTVLDYQTLHSC 498
           DPQVE+W+ +V+EL +G + +   ++++Y ++  C
Sbjct: 70  DPQVELWLRRVDELKLGAIDEDYSSLMNYSSICQC 104


>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
          Length = 507

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 282 SGGTGRAVIGSGTWDA---VQARLERVAPMQAPPEP 380
           SGGTGRA +G G   A     A  E VAP   PP P
Sbjct: 105 SGGTGRAGLGLGGNRASAPAAAHREAVAPSFTPPPP 140


>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 385 GLGSGGACIGATRSRRACTASHVPDPITARPVPP 284
           G GSG A + A R R     S   D + + P+PP
Sbjct: 36  GEGSGAAVVPAKRRRERVVPSRFRDSVVSLPLPP 69


>05_05_0251 + 23616546-23617760
          Length = 404

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 351 VAPMQAPPEPSPSIMAP 401
           VAP Q PP P PSI+ P
Sbjct: 41  VAPQQPPPPPLPSILVP 57


>07_02_0023 -
           11918735-11918827,11919139-11919231,11919320-11919484,
           11920234-11920327,11921012-11921136,11921228-11921313,
           11921786-11921864,11923777-11923857,11924153-11924260,
           11924870-11924994,11925110-11925530
          Length = 489

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 270 EAEISGGTGRAVIGSGTWDAVQARLERVAPMQAPPE 377
           EAE  GG   AV G G+ DA  A L   A    PP+
Sbjct: 69  EAENGGGKVVAVTGKGSADAKYAPLSSFAATALPPQ 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,473,869
Number of Sequences: 37544
Number of extensions: 408497
Number of successful extensions: 1540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)