Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0638
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                30   2.2  
SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +1

Query: 403 TSLHLCTLQYLXXXXXXPYWCQPKCKD-FEVQPQLWRVW 516
           T  +LC ++Y        Y      KD FE+  +LWR W
Sbjct: 358 TDFYLCYIRYYDYYQPGDYMLYSNKKDIFEIHTRLWRCW 396


>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 255 EMSRFEAEISG-GTGRAVIGSGTWD-AVQARLERVAPMQAPPEPSPSIMAP 401
           EMSRFE EI+G    R +I + T+  A QA  E V     PP+ +   +AP
Sbjct: 19  EMSRFEQEIAGHPVPRPIISANTFKMASQAIQEAVVHNVPPPQITARPVAP 69


>SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 108 DARMCMYFNKRHIVVPKLSNISA*IFWNSLR 200
           D+RM M   +RH +VP L  +    FW   R
Sbjct: 6   DSRMAMRVKQRHGMVPPLDQLEYDDFWKEFR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,474,159
Number of Sequences: 59808
Number of extensions: 433706
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)