Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0638
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 32 0.47
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 31 0.82
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 31 0.82
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 31 0.82
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 31 0.82
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 31 0.82
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 29 3.3
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 29 3.3
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 29 3.3
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 29 3.3
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 28 5.8
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 28 5.8
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 216 HHGRILKVSTDAREMSRFEAEISGGTGRAVIGSGTWDAVQA 338
+ GR+L S E RFE E+S R V+G GT+ V A
Sbjct: 642 YQGRVL--SNPDNEKIRFEYELSNSNERVVLGKGTYGTVYA 680
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1149 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1182
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1183 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1216
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1241 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1274
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1294 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1327
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+PS S
Sbjct: 1213 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPSES 1246
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 391 IEGLGSGGACIGATRSRRACTASHVPDPI 305
IE + + G+ T +RR+CT+ H PD +
Sbjct: 375 IESVNAKGSTNSTTYNRRSCTSLHAPDKL 403
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+P S
Sbjct: 1205 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPPES 1238
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+P S
Sbjct: 1183 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPPES 1216
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 288 GTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPS 389
GT + W ++ARL+ P+ PP+P S
Sbjct: 1205 GTALLTVDQRRWHDLKARLKMAQPLHVPPKPPES 1238
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 189 NSLRLRLALHHGRILKVSTDAREMSRFEAEIS 284
NSL + A HGR L + TD SR A IS
Sbjct: 1524 NSLSISAASQHGRKLSMKTDVEGRSRLLAMIS 1555
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 189 NSLRLRLALHHGRILKVSTDAREMSRFEAEIS 284
NSL + A HGR L + TD SR A IS
Sbjct: 1522 NSLSISAASQHGRKLSMKTDVEGRSRLLAMIS 1553
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,127
Number of Sequences: 27780
Number of extensions: 316521
Number of successful extensions: 919
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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