Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0638
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family...    32   0.33 
At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putat...    29   4.1  
At4g02760.1 68417.m00376 F-box family protein contains Pfam PF00...    28   7.1  
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do...    27   9.4  

>At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 175

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 EAEISGGTGRAVIGSGTWDAVQARLERVAPMQAPPEPSPSIMAP 401
           E   + G   +++G+  + + + RL+R +P   PP PSP    P
Sbjct: 32  ECNCNSGACNSLVGATYYPSCKPRLQRYSPYGNPPPPSPQYSPP 75


>At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putative
           similar to 2-oxoglutarate/malate translocator precursor,
           spinach, SWISSPROT:Q41364
          Length = 557

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 458 IGASPSAKTSKFNRSYGGFGSPIPFL 535
           +GAS   KT  F  ++  FG PIP+L
Sbjct: 147 LGASVLTKTLTFAAAFSAFGDPIPWL 172


>At4g02760.1 68417.m00376 F-box family protein contains Pfam
           PF00646: F-box domain; similar to leucine-rich repeats
           containing F-box protein FBL3 (GI:5919219) [Homo
           sapiens]
          Length = 419

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 325 SHVPDPITARPVPPDISASNLDISLASVETLRILP 221
           S + +P +  P+ PD + SN+D++++S  +L  LP
Sbjct: 17  SSIENPCSL-PIAPDFNQSNIDLTISSFLSLSDLP 50


>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
           domain-containing protein low similarity to polyamine
           oxidase isoform-1 [Homo sapiens] GI:14860862; contains
           Pfam profiles PF01593: amine oxidase flavin-containing,
           PF04433: SWIRM domain
          Length = 1265

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 401 IRAYTCVPCXXXXXXXXILIGASPSAKTSKFNRSYGGF 514
           +R   CVPC        I+IGA P+  T+  +    GF
Sbjct: 604 MRGRDCVPCEVIDEKKVIVIGAGPAGLTAARHLQRQGF 641


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,482
Number of Sequences: 28952
Number of extensions: 298841
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)