Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0637
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   146   5e-36
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.6  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   4.6  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   6.1  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  146 bits (353), Expect = 5e-36
 Identities = 84/206 (40%), Positives = 112/206 (54%), Gaps = 1/206 (0%)
 Frame = +2

Query: 8   ITRAPEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKP 187
           IT APE+LGGRVKTLHPAVH GILAR   SD++D+  Q  E I +VVCNLYPF +T++KP
Sbjct: 50  ITNAPEILGGRVKTLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKP 109

Query: 188 DVTVADAVENIDIGGVTLLRAXQEXXXXXXXXXXXXXXCC-SQRNQREQTSSDDFGHKAE 364
           +VT+ +AVE IDIGGVTLLRA  +                 + +   ++ + DD    A 
Sbjct: 110 NVTIPEAVEEIDIGGVTLLRAAAKNHARVTILSDPADYATFTDKFLSDKLTQDDRNTYAL 169

Query: 365 ISPEGVHSYFGL*PRHIGLLPQAILARASPTDLKIRYEPTSEAGPGIHTRDSLPITTLNG 544
            +     SY      +     +   A      L+    P          +  LP   L G
Sbjct: 170 KAFASTASYDAAITDY---FRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCG 226

Query: 545 APGFINLCDALNAWQLVKELKEALNL 622
           +PG+INL DALN+W LVKEL+E + +
Sbjct: 227 SPGYINLMDALNSWPLVKELRENIGI 252



 Score =   99 bits (238), Expect = 4e-22
 Identities = 67/184 (36%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
 Frame = +3

Query: 246 AXSKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYF 425
           A +KNH RVT++ DPADY     +   +K    T   R   ALKAF  T+ YD AI+DYF
Sbjct: 130 AAAKNHARVTILSDPADYATFTDKFLSDK---LTQDDRNTYALKAFASTASYDAAITDYF 186

Query: 426 RKQYSPGQAQLTLRYGMNPHQKPAQVFTPETACRSRH*TVRLDLSTCATR*TPGXXXXXX 605
           RKQY+ G  QLTLRYG NPHQ PAQ F  +     +                        
Sbjct: 187 RKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGSPGYINLMDALNSWPLVKEL 246

Query: 606 XXXXTFPAAASFQARVPCRSCRGL-ATXXXXXXXXXXXXXELSXXXXXXXXXXXXDRMSS 782
                 PAAASF+   P  +  GL  +             E +            DRMSS
Sbjct: 247 RENIGIPAAASFKHVSPAGAAVGLPLSDVEKKVYFVSDITEFTPLACAYARARGADRMSS 306

Query: 783 FGDF 794
           FGDF
Sbjct: 307 FGDF 310



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +1

Query: 637 AFKHVSPAGAAVGLPLTDEEAAVCMV 714
           +FKHVSPAGAAVGLPL+D E  V  V
Sbjct: 257 SFKHVSPAGAAVGLPLSDVEKKVYFV 282


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 237 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 142
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 722 APPTMHTAASSSVSGKPTAAPAG 654
           +PPT H A++S ++ KP+  PAG
Sbjct: 427 SPPTPH-ASASKLAAKPSVKPAG 448


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -2

Query: 518 CLWCEYLG-RLLMWVHTVS*GQLGLPGRVLLAEVVRYGEVIVRSMSERLQG*SLPCAQSR 342
           C++   LG + + W  +V    LG+    L A    +GE+    +S R    SLPC  S 
Sbjct: 79  CVFMSILGMQWIAWSSSVPSKMLGVS---LAAISSSFGEISFLHLSSRYHSVSLPCWSSG 135

Query: 341 LMMFVLFDFFDYSIV 297
             +  LF    Y ++
Sbjct: 136 TGLAGLFGASSYLVM 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,239
Number of Sequences: 5004
Number of extensions: 53023
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)