Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0637
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    81   1e-15
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853     28   8.5  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   8.5  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
 Frame = +2

Query: 8   ITRAPEMLGGRVKTLHPAVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFVQTVSK 184
           IT  PEML GRVKTLHP+VH GILAR       + +         VVV NLYPF   V+ 
Sbjct: 95  ITNFPEMLDGRVKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTS 154

Query: 185 PDVTVADAVENIDIGGVTLLRA 250
             ++  D +ENIDIGG T++RA
Sbjct: 155 GVISFEDGIENIDIGGPTMIRA 176



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 21/105 (20%)
 Frame = +3

Query: 246 AXSKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYF 425
           A +KNH  V V+ D  DY A+++ ++  +  Q     R+ LA KAF H + YD A+S++ 
Sbjct: 176 AAAKNHKDVLVMVDHEDYPALLEYLQGKQDDQQF---RKMLAWKAFQHVASYDSAVSEWL 232

Query: 426 RKQYS---------------------PGQAQLTLRYGMNPHQKPA 497
            KQ +                     P   + TLRYG NPHQK A
Sbjct: 233 WKQSNKDIITLSCSHVGDVFPPNFTVPLSLKSTLRYGENPHQKAA 277


>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
          Length = 383

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 417 DYFRKQYSPGQAQLTLRYGMN-PHQKPAQVFT 509
           D    QY PG + L L YG++ PH +P   F+
Sbjct: 49  DVGNNQYLPGNSPLQLPYGIDFPHSRPTGRFS 80


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 220 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 140
           DVL  +R GHV L Y L E      DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,882,182
Number of Sequences: 37544
Number of extensions: 414905
Number of successful extensions: 1379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)