Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0637
         (870 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             158   5e-39
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      84   2e-16
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)                 30   2.1  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                30   2.8  
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  158 bits (384), Expect = 5e-39
 Identities = 90/206 (43%), Positives = 112/206 (54%), Gaps = 1/206 (0%)
 Frame = +2

Query: 8   ITRAPEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKP 187
           IT APEMLGGRVKTLHPAVH GILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K 
Sbjct: 83  ITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKE 142

Query: 188 DVTVADAVENIDIGGVTLLRAXQEXXXXXXXXXXXXXXCCSQRNQREQTSSDDFGHKAEI 367
            V V++AVE IDIGGVTLLRA  +                      E  + D      + 
Sbjct: 143 GVIVSEAVEQIDIGGVTLLRAAAKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKT 202

Query: 368 SPEGVHSYFGL*PRHIG-LLPQAILARASPTDLKIRYEPTSEAGPGIHTRDSLPITTLNG 544
                 S+       I     +      S   L+    P  +    +     LP+  LNG
Sbjct: 203 LALKAFSHTASYDMAISDYFRKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPVKVLNG 262

Query: 545 APGFINLCDALNAWQLVKELKEALNL 622
           APGFINLCDA N+WQLV+EL ++L +
Sbjct: 263 APGFINLCDAFNSWQLVRELHQSLGI 288



 Score =  125 bits (302), Expect = 4e-29
 Identities = 74/185 (40%), Positives = 93/185 (50%), Gaps = 2/185 (1%)
 Frame = +3

Query: 246 AXSKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYF 425
           A +KNH+RVTVVCDP DY+ V+ E+ EN+   T   TR+ LALKAF+HT+ YD+AISDYF
Sbjct: 163 AAAKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASYDMAISDYF 222

Query: 426 RKQYSPGQAQLTLRYGMNPHQKPAQVFTPETACRSRH*TVRLDLSTCATR*TPGXXXXXX 605
           RK+YS   + + LRYGMNPHQKPAQ+ T E     +                        
Sbjct: 223 RKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPVKVLNGAPGFINLCDAFNSWQLVREL 282

Query: 606 XXXXTFPAAASFQARVPCRSCRG--LATXXXXXXXXXXXXXELSXXXXXXXXXXXXDRMS 779
                 PAAASF+   P  +  G  L                L+            DRMS
Sbjct: 283 HQSLGIPAAASFKHVSPAGAAVGTPLTPDEAKVCMVDDMLDRLTPLATAYARARGADRMS 342

Query: 780 SFGDF 794
           SFGD+
Sbjct: 343 SFGDW 347



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +1

Query: 637 AFKHVSPAGAAVGLPLTDEEAAVCMV 714
           +FKHVSPAGAAVG PLT +EA VCMV
Sbjct: 293 SFKHVSPAGAAVGTPLTPDEAKVCMV 318


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 40/59 (67%), Positives = 48/59 (81%)
 Frame = +2

Query: 74  ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 250
           ILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 246 AXSKNHDRVTVVCDPADYD 302
           A +KNH+RVTVVCDP DY+
Sbjct: 60  AAAKNHERVTVVCDPEDYN 78


>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
          Length = 346

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 719 PPTMHTAASSSVSGKPTAAPAGDTCLKAS 633
           PPT+  AA++  +G+PT APA  T  +A+
Sbjct: 316 PPTVAPAATTPPTGEPTGAPAATTPTEAA 344


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 37/144 (25%), Positives = 53/144 (36%)
 Frame = +1

Query: 271  SPSSVTRPTTML*SKKSKRTNIIRRLWAQGRD*P*RRSLILRTMTSPYRTTSASNTRPGK 450
            SP  VT+ +     K+ +  +  RR  +     P RRS   RT  SP RT        G 
Sbjct: 1033 SPQRVTKSSKERPRKRPRHQSRERRPSSS----PPRRSRPQRTSPSPRRTPEDRRRSRGS 1088

Query: 451  PN*P*DTV*THIRSRPRYSHQRQLADHDTERCAWIYQPVRRAERLAARQGAEGSAEPFLL 630
               P        R  P  S  R+    +  + +    P R   R  +   +EG  +P  +
Sbjct: 1089 RRSPSPPKREPRRRSPSASPPRR----EARKRSLSRSPKREVRRRGSPSPSEGRKKPVDV 1144

Query: 631  RLAFKHVSPAGAAVGLPLTDEEAA 702
             +  +   P  AA   P  DEE A
Sbjct: 1145 EMGEEEAPPCKAARKSPSADEEPA 1168


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 264  DRVTVVCDPADYDAVVKEIKE-NKHHQTTL 350
            D +   CDPA+ +A++  I+E N+HHQ  L
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVL 1476


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 92  DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVT 238
           +SD+ED + + YE+I          ++ +   D+     ++ I IGG T
Sbjct: 5   ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 323 FDFFDYSIVVGRVTDDGDPVVVL 255
           FDF D+SI+V ++T    PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/70 (30%), Positives = 27/70 (38%)
 Frame = +2

Query: 521  LPITTLNGAPGFINLCDALNAWQLVKELKEALNLSCCG*LSSTCPLPELPWACHSRMKRX 700
            LP TTL       N  ++L     +   K    + CC  LSS+CP    P  C S     
Sbjct: 1539 LPPTTLGQ-----NTANSLCPVYCLTSCKPDCPIKCCTKLSSSCPADCSPQNCKSSCPSI 1593

Query: 701  RCAWLAGRTK 730
             C  + G  K
Sbjct: 1594 CCITIRGSAK 1603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,297,522
Number of Sequences: 59808
Number of extensions: 450521
Number of successful extensions: 1431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)