Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0637
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 138 6e-33
U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical pr... 54 2e-07
U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical pr... 51 9e-07
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 29 4.3
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 29 4.3
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 28 7.5
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 28 7.5
L16559-10|AAA27927.1| 371|Caenorhabditis elegans Hypothetical p... 28 10.0
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 28 10.0
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 28 10.0
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 138 bits (333), Expect = 6e-33
Identities = 85/211 (40%), Positives = 114/211 (54%), Gaps = 4/211 (1%)
Frame = +2
Query: 2 AXITRAPEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVS 181
A +T+ PEMLGGRVKTLHPAVH GILAR ++SD++D+++ +SVVVCNLYPF +TV
Sbjct: 53 ADVTKFPEMLGGRVKTLHPAVHGGILARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQ 112
Query: 182 KPDVTVADAVENIDIGGVT-LLRAXQEXXXXXXXXXXXXXXCCSQRNQREQTSSDDFGHK 358
D +V +AVENIDIGGVT L A + + T+ +
Sbjct: 113 SKDCSVEEAVENIDIGGVTLLRAAAKNHERVSVICDPADYDHIISELKSGGTTRERRQLL 172
Query: 359 AEISPEGVHSYFGL*PRHIGLLPQAILARASPTDLKIRY--EPTSEAGPGIH-TRDSLPI 529
A + E SY I + A L +RY P + ++ D +PI
Sbjct: 173 ALKAFEHTTSY----DESISGFMRRRFAGNGERALPLRYGTNPHQKDDAELYIVEDEMPI 228
Query: 530 TTLNGAPGFINLCDALNAWQLVKELKEALNL 622
LNG+PG+IN+ D LN WQLVKEL +A +
Sbjct: 229 KVLNGSPGYINILDGLNGWQLVKELSDATKM 259
Score = 92.7 bits (220), Expect = 3e-19
Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +3
Query: 246 AXSKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYF 425
A +KNH+RV+V+CDPADYD ++ E+K TT RQ LALKAF HT+ YD +IS +
Sbjct: 135 AAAKNHERVSVICDPADYDHIISELKSG---GTTRERRQLLALKAFEHTTSYDESISGFM 191
Query: 426 RKQYS-PGQAQLTLRYGMNPHQK 491
R++++ G+ L LRYG NPHQK
Sbjct: 192 RRRFAGNGERALPLRYGTNPHQK 214
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +1
Query: 637 AFKHVSPAGAAVGLPLTDEEAAVCMV 714
+FKHVSPAGAAVGLPL + EAA CMV
Sbjct: 264 SFKHVSPAGAAVGLPLNETEAACCMV 289
>U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical
protein C55F2.1c protein.
Length = 393
Score = 53.6 bits (123), Expect = 2e-07
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +2
Query: 515 DSLPITTLNGAPGFINLCDALNAWQLVKELKEALNL 622
D +PI LNG+PG+IN+ D LN WQLVKEL +A +
Sbjct: 94 DEMPIKVLNGSPGYINILDGLNGWQLVKELSDATKM 129
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +3
Query: 375 KAFTHTSDYDLAISDYFRKQYS-PGQAQLTLRYGMNPHQK 491
KAF HT+ YD +IS + R++++ G+ L LRYG NPHQK
Sbjct: 45 KAFEHTTSYDESISGFMRRRFAGNGERALPLRYGTNPHQK 84
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +1
Query: 637 AFKHVSPAGAAVGLPLTDEEAAVCMV 714
+FKHVSPAGAAVGLPL + EAA CMV
Sbjct: 134 SFKHVSPAGAAVGLPLNETEAACCMV 159
>U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical
protein C55F2.1a protein.
Length = 420
Score = 51.2 bits (117), Expect = 9e-07
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 521 LPITTLNGAPGFINLCDALNAWQLVKELKEALNL 622
+PI LNG+PG+IN+ D LN WQLVKEL +A +
Sbjct: 1 MPIKVLNGSPGYINILDGLNGWQLVKELSDATKM 34
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +1
Query: 637 AFKHVSPAGAAVGLPLTDEEAAVCMV 714
+FKHVSPAGAAVGLPL + EAA CMV
Sbjct: 39 SFKHVSPAGAAVGLPLNETEAACCMV 64
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
C25D7.3 protein.
Length = 2150
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 59 AVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADA 208
AV I +SD++ D+ R+K E S++ N+ Q +++ DVT A
Sbjct: 990 AVTENIRQEMSDAEMRDLMRKKREQYSMLFPNVPQPFQPLNRFDVTAPGA 1039
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
protein.
Length = 2150
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 59 AVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADA 208
AV I +SD++ D+ R+K E S++ N+ Q +++ DVT A
Sbjct: 990 AVTENIRQEMSDAEMRDLMRKKREQYSMLFPNVPQPFQPLNRFDVTAPGA 1039
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 44 KTLHPAVHAGIL-ARLSDSDQEDMK 115
K+LHP+VHA +L +SD D ED++
Sbjct: 996 KSLHPSVHALVLEPMMSDPDGEDVE 1020
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 44 KTLHPAVHAGIL-ARLSDSDQEDMK 115
K+LHP+VHA +L +SD D ED++
Sbjct: 1081 KSLHPSVHALVLEPMMSDPDGEDVE 1105
>L16559-10|AAA27927.1| 371|Caenorhabditis elegans Hypothetical
protein C06E1.11 protein.
Length = 371
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 306 VVKEIKENKHHQTTLGTRQRLALKAFTHTS 395
V KE+K++ HH TT T + +A A T+ S
Sbjct: 69 VGKEVKKDYHHGTTRNTIKTVATTATTYAS 98
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 74 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI--GGVTLLR 247
++ +L D D + + + S++ NL F + V +TVA E ++ GG+ LR
Sbjct: 494 LICKLLDKDSQRITSLNQRLHSIIEKNLGDFCEVVVDEHITVASLSEYLESFEGGMYALR 553
Query: 248 AXQE 259
E
Sbjct: 554 LVME 557
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 74 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI--GGVTLLR 247
++ +L D D + + + S++ NL F + V +TVA E ++ GG+ LR
Sbjct: 494 LICKLLDKDSQRITSLNQRLHSIIEKNLGDFCEVVVDEHITVASLSEYLESFEGGMYALR 553
Query: 248 AXQE 259
E
Sbjct: 554 LVME 557
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,944
Number of Sequences: 27780
Number of extensions: 316322
Number of successful extensions: 956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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