Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0637
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    79   4e-15
At1g64410.1 68414.m07301 hypothetical protein                          31   1.3  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    31   1.3  
At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein si...    30   1.7  
At4g36980.1 68417.m05240 expressed protein                             29   3.1  
At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A...    29   5.3  
At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger) fa...    28   7.1  
At1g11780.1 68414.m01352 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   7.1  
At2g24230.1 68415.m02894 leucine-rich repeat transmembrane prote...    28   9.3  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
 Frame = +2

Query: 8   ITRAPEMLGGRVKTLHPAVHAGILARLS-DSDQEDMKRQKYEMISVVVCNLYPFVQTVSK 184
           +T  PEML GRVKTLHP +H GILAR   +   E +         VVV NLYPF + V+ 
Sbjct: 121 LTHFPEMLDGRVKTLHPNIHGGILARRDVEHHMEALNEHGIGTFDVVVVNLYPFYEKVTA 180

Query: 185 P-DVTVADAVENIDIGGVTLLRA 250
           P  ++  D +ENIDIGG  ++RA
Sbjct: 181 PGGISFEDGIENIDIGGPAMIRA 203



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
 Frame = +3

Query: 246 AXSKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYF 425
           A +KNH  V +V D  DY AV++ +K  +  Q     R++LA KAF H + YD A+S++ 
Sbjct: 203 AAAKNHKDVLIVVDSGDYQAVLEYLKGGQSDQQ---FRRKLAWKAFQHVAAYDSAVSEWL 259

Query: 426 RKQYS-----------PGQAQLTLRYGMNPHQKPA 497
            KQ             P   + +LRYG NPHQK A
Sbjct: 260 WKQTEGKEKFPPSFTVPLVLKSSLRYGENPHQKAA 294


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 KNHDRVTVVCDPADYDAVVKEIKENKHH 338
           K HDRVTV  +P D D   KE  E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 KNHDRVTVVCDPADYDAVVKEIKENKHH 338
           K HDRVTV  +P D D   KE  E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF01301: Glycosyl hydrolases family 35
          Length = 718

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 564 RLINPGAPFSVVIGKLSLV*IPGPAS--DVGSYRILRSVGLARASIACGSS 418
           R++   AP S++ G+ ++  + G     D G+Y   RS GL +  I+CG +
Sbjct: 522 RVVKLQAPVSLINGQNNISILSGMVGLPDSGAYMERRSYGLTKVQISCGGT 572


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = -2

Query: 155 GYRPPRLSSRTSDVSCLPGQSRIIELRSQHVPLDVKFSPDLRASPVLS 12
           GY PPR     SD+   P   RI+E        D+    D  A P  S
Sbjct: 355 GYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKS 402


>At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit A (RCN1) identical to
           phosphoprotein phosphatase 2A, regulatory subunit A
           GI:1262171 from [Arabidopsis thaliana]
          Length = 588

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 709 CTPXPLHP*VASPRQLRQGTRA*KLAAAGKVQRFLQLLDELPGVQRV 569
           CT   L P  A  R LR      ++AAAGKV +F +LL+    +Q +
Sbjct: 276 CTRTDLVP--AYVRLLRDNEAEVRIAAAGKVTKFCRLLNPELAIQHI 320


>At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 395

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -1

Query: 219 MFSTASATVTSGLDTVWTNGYRLQTTTLIISYF*----RFMSSWSESDNRAKI--PACTA 58
           M ++ SAT+T   ++  T      TTTL  SY+     RF+S W + D  A +  P C  
Sbjct: 2   MPNSRSATITPTTESTTTT--TTTTTTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNG 59

Query: 57  G 55
           G
Sbjct: 60  G 60


>At1g11780.1 68414.m01352 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to alkB proteins from Homo
           sapiens [SP|Q13686], Caulobacter crescentus
           [GI:2055386]; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 345

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 515 DSLPITTLNGAPGFINLCDALNAWQLVKELKEAL 616
           DS P+  ++  PGF  + DAL+  +  K +KE+L
Sbjct: 74  DSSPVFCIDNRPGFYFIPDALSLKEQCKWIKESL 107


>At2g24230.1 68415.m02894 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 853

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 648 VLES*PQQERFSASFSSLTSCQA-FSA 571
           +LE  P  ERF+ SF++LT C   FSA
Sbjct: 395 ILEKLPWMERFNFSFNNLTFCSGKFSA 421


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,258
Number of Sequences: 28952
Number of extensions: 298590
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)