Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0636
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   7.2  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 255 RFEYYFTFIRWPATKKQAKCIQGREIKRVYGTDQTSLDRGK 377
           R++    F RW A   +   I+   I +VY  DQ ++ +G+
Sbjct: 135 RYDLTVPFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKGR 175


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 213 FLSDVNTPYGKFSIGKSESDEYSMK 139
           F SD N+    FS+G++ S  YS+K
Sbjct: 101 FKSDTNSTSSGFSVGEAISSGYSLK 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,994
Number of Sequences: 5004
Number of extensions: 73537
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)