Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0636
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 96 3e-20
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 31 1.1
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 31 1.4
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 30 2.5
03_04_0246 - 19324858-19325159,19325239-19325479,19326420-193265... 29 4.3
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128... 29 4.3
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 29 5.7
08_02_0381 - 16518670-16518726,16518841-16518941,16519030-165192... 28 7.5
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 96.3 bits (229), Expect = 3e-20
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 9/177 (5%)
Frame = +1
Query: 235 GDWRMDLDLNIISRLFDGPLLKSKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSP 414
GD+ +DL + LF GPLL S F++E LN F+ + +P W EAR TLQK+L P
Sbjct: 49 GDFALDLAAVSDAGLFHGPLL-SASPCFRQETLNMFLGMGRPAWKEARATLQKILSADEP 107
Query: 415 ALQNNAELREKAFVKQTDVQMHVPVEVGDYT---ASI---RRCSTLPT*A*CSGERRPLC 576
L++N L++K V +D +M +P+ VGDYT S+ R C + G + P+
Sbjct: 108 VLRDNEALKKKCLVPMSDTEMLLPITVGDYTDFFCSVHHARNCGFI-----FRGPQTPVN 162
Query: 577 SRTGNI---YRWVIMDVPVL**SLGTPIHRPYGQTLPVEXAAPHFGPCRLMDFELEV 738
+ Y V V GT I RP GQ P + P+FGP + +DFELE+
Sbjct: 163 PNWFQLPVGYHGRASSVIV----SGTDIIRPKGQGHPTGDSRPYFGPSKKLDFELEM 215
Score = 60.1 bits (139), Expect = 2e-09
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +3
Query: 510 FYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISG 641
F+ S+ HA N G +FRG + + NW LPVGYHGR+SS+++SG
Sbjct: 140 FFCSVHHARNCGFIFRGPQTPVNPNWFQLPVGYHGRASSVIVSG 183
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +2
Query: 131 MKSFIEYSSDSDFPIENLPYGVFT---SDKNAQKHIGVAIGEW 250
++SF+E + S FPI+NLP+GVF S + VAIG++
Sbjct: 9 LRSFVEVAPGSHFPIQNLPFGVFRRRGSPEPEPPRPAVAIGDF 51
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 588 KHLPVGYHGRSSSIVISGHTYPQALWTDLACRXCG 692
K + + Y ++ ++ISGH P+ L L C+ CG
Sbjct: 36 KIINIVYENSNNRVIISGHFKPEELAHKLRCKACG 70
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 94 HSKNLLCQVVA*NEIFHRILVRFRFSNRKFTVRCVYV**KCSKTHRRGDWRMDL---DLN 264
HS NL+ ++ E+F RI+ R +S R C + H G + DL +
Sbjct: 138 HSVNLIMELCEGGELFDRIIARGHYSERAAAALCREIVAVVHSCHSMGVFHRDLKPENFL 197
Query: 265 IISRLFDGPL 294
+S+ D PL
Sbjct: 198 FLSKSEDSPL 207
>05_05_0005 + 21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 289 PLLKSKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQ 462
P N KEE A AL + + E L+ LL++S+ L+NN L E A V Q
Sbjct: 880 PYTSEASNGVKEEASPAKEALDVTSFRQRAEALEGLLELSADLLENN-RLEELAIVLQ 936
>03_04_0246 -
19324858-19325159,19325239-19325479,19326420-19326594,
19326681-19326748,19327248-19327365,19327979-19328007
Length = 310
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = -2
Query: 548 YAYVGSVLQRRIEAV*SPTSTGTCICTSVCFTKAFSRSSALFCNAGLETSSNFCKVSLAS 369
+A+ L ++ P S + C +C+T S CN GL S +VS+++
Sbjct: 120 FAFAIIALHPQVNGSVMPASVISVYCAYLCYTSLSSEPDDYACN-GLHRHSK--QVSMSA 176
Query: 368 IQ*GLVSAINAFNFSSLNT-FCLLFSSGPSNKR 273
+ G+++ + + +S++ F S PS+ R
Sbjct: 177 LILGMLTTVLSVVYSAVRAGSSTTFLSPPSSPR 209
>02_02_0620 +
12210812-12210997,12212397-12212474,12212744-12212848,
12212998-12213022,12213214-12213266,12213523-12213635,
12213777-12213801,12214560-12214601,12214666-12214726,
12216027-12216043,12217143-12217257,12217431-12218659
Length = 682
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +2
Query: 389 RNCWTFLVLHCKTMPSYVKRLS*SRRTYKCTCLLKSEITQLLFVAAARYQRRHNVQGKGG 568
++C TF +LH R++ + T+ + ++ ++ + A Y R V + G
Sbjct: 286 KHCKTFRMLHPSPESHPTFRMTDNCNTF--STIVAEAVSGSHVIKIAGYSRI-KVLLRNG 342
Query: 569 RSVRELETSTGGLSWTFQFY 628
S+ + S G SWT +FY
Sbjct: 343 ESLTSIPFSVAGHSWTIRFY 362
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 350 SAINAFNFSSLNTFCLLFSSGPSNKREIIFKSKSILQS 237
SA F L TF L+ SSGP N RE F S+++S
Sbjct: 209 SADKTVKFWDLETFELIGSSGPENSRE-YFVPASVVRS 245
>08_02_0381 -
16518670-16518726,16518841-16518941,16519030-16519200,
16519498-16519672,16519787-16519887,16520247-16520358,
16520522-16521055,16521966-16522056,16523403-16523590,
16523676-16523960
Length = 604
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 711 AGTEVGRRTFDRQGLSIRPVDRCAQRSL*NWNVHDNPPVDVSSSRTERPPFP 556
+G G R +GLS P R +R L PP+ +S++ RP P
Sbjct: 14 SGAGAGARRSSAEGLSPPPTARLRRRVLCAIRADAPPPIHLSAAAPSRPAKP 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,772,169
Number of Sequences: 37544
Number of extensions: 479577
Number of successful extensions: 1121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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