Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0636
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    27   0.27 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    26   0.35 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    26   0.35 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    25   0.82 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.4  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +3

Query: 501 LHSFYSSLQ-HATNV-----GIMFRGKEAALFENWKHLPVGYHGRSSSIVISGH--TYPQ 656
           L  +Y +LQ H   V     GI+ R  E  +  NW  +P G +  S++ +I GH  T  +
Sbjct: 37  LDGWYQTLQTHMKKVREQMAGILSRIPEQGVV-NWNKIPEGANTTSTTKIIDGHVVTINE 95

Query: 657 ALWTD 671
             +TD
Sbjct: 96  TTYTD 100


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 543 GIMFRGKEAALFENWKHLPVGYHGRSSSIVISGH--TYPQALWTD 671
           GI+ R  E  +  NW  +P G +  S++ +I GH  T  +  +TD
Sbjct: 105 GILSRIPEQGVV-NWNKIPEGANTTSTTKIIDGHVVTINETTYTD 148


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 543 GIMFRGKEAALFENWKHLPVGYHGRSSSIVISGH--TYPQALWTD 671
           GI+ R  E  +  NW  +P G +  S++ +I GH  T  +  +TD
Sbjct: 105 GILSRIPEQGVV-NWNKIPEGANTTSTTKIIDGHVVTINETTYTD 148


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 543 GIMFRGKEAALFENWKHLPVGYHGRSSSIVISGH 644
           GI+ R  E  +  NW  +P G +  S++ +I GH
Sbjct: 105 GILSRIPEQGVV-NWNKIPEGANTTSTTKIIDGH 137


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 186  RTVCLRLIKMLKNTSAWRLENGFRFEYYFTFIRWPATKKQAKCIQGREIKRVYGTDQTSL 365
            +T+    IK++       L  G   +    FI+   +  Q++ IQ +++KRV    Q S+
Sbjct: 1018 KTLLASQIKLVSPGQIKSLLTGHGLQGQTIFIKQSPSSNQSQQIQQQQLKRVVTNQQQSI 1077


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 499 LRLQQARAFVRPSASRKPFHV 437
           +RL  ARAF+ P  +R   HV
Sbjct: 261 VRLSSARAFITPFENRSNLHV 281


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 740 PTSSSKSISLQGPKWG 693
           P+SS+KS  L+GP+ G
Sbjct: 199 PSSSTKSYVLEGPRNG 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,815
Number of Sequences: 438
Number of extensions: 5028
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)