Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0636
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t...    90   2e-18
At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C...    30   1.6  
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    30   2.1  
At4g39580.1 68417.m05596 kelch repeat-containing F-box family pr...    29   4.7  
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei...    29   4.7  
At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic ...    28   8.3  

>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
           fumarylacetoacetase (Fumarylacetoacetate hydrolase,
           Beta-diketonase, FAA)[Rattus norvegicus]
           SWISS-PROT:P25093
          Length = 421

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
 Frame = +1

Query: 253 LDLNIISR--LFDGPLLKSKQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQN 426
           LDL+ IS   LFDG +LK   + F +  LN F+A+ +P W EAR TLQ++L  + P L++
Sbjct: 45  LDLSAISEAGLFDGLILKDA-DCFLQPNLNKFLAMGRPAWKEARSTLQRILSSNEPILRD 103

Query: 427 NAELREKAFVKQTDVQMHVPVEVGDYT---ASI---RRCSTLPT*A*CSGERRPLCSRTG 588
           N  LR K+F + + V+M VP+ +GDYT   AS+   + C  +           P   R  
Sbjct: 104 NDVLRRKSFHQMSKVEMIVPMVIGDYTDFFASMHHAKNCGLMFRGP--ENAINPNWFRLP 161

Query: 589 NIYRWVIMDVPVL**SLGTPIHRPYGQTLPVEXAAPHFGPCRLMDFELEV 738
             Y      + +     GT I RP GQ  P   + P+FGP + +DFELE+
Sbjct: 162 IAYHGRASSIVI----SGTDIIRPRGQGHPQGNSEPYFGPSKKLDFELEM 207



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 27/44 (61%), Positives = 34/44 (77%)
 Frame = +3

Query: 510 FYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISG 641
           F++S+ HA N G+MFRG E A+  NW  LP+ YHGR+SSIVISG
Sbjct: 132 FFASMHHAKNCGLMFRGPENAINPNWFRLPIAYHGRASSIVISG 175



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +2

Query: 131 MKSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWI 253
           +KSFI+  SDS FPI+NLPYGVF  + N+     VAIG+ +
Sbjct: 4   LKSFIDVGSDSHFPIQNLPYGVFKPESNSTPRPAVAIGDLV 44


>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GI:2582800
           from [Medicago sativa]
          Length = 380

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 467 SVCFTKAFSRSSALFCNAGLETSSNFCKVSLA-SIQ*GLVSAINAFNFSSLNTFCLLFSS 291
           +VC +  FS SS+LFCN  L TS     ++L+ S     VS+ +    S  + FCL    
Sbjct: 6   AVCNSPVFSPSSSLFCNKPLNTSPAHETLTLSLSHLNPPVSSTSPSAASPTSPFCLRLLK 65

Query: 290 GPS 282
            P+
Sbjct: 66  PPA 68


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 192 VCLRLIKMLKNTSAWRLENGFRFEYYFTFIRW 287
           +C  +  +LKN      EN FRF Y   F+RW
Sbjct: 104 MCSEVYNLLKNNYVEDDENMFRFNYSKEFLRW 135


>At4g39580.1 68417.m05596 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 375

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 764 VGGPADNAPTSSSKSISLQGPKWGAAXS 681
           +GGP ++AP+SS   +  Q  KW  A S
Sbjct: 136 IGGPINDAPSSSVSVLDCQCEKWREAPS 163


>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 268

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 492 SRRLHSFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGHTYPQALWTD 671
           S+RL+  Y+S+Q  + +   F G       NW+ LP+ +  + S+  + G    Q    D
Sbjct: 173 SKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQ-LPLPFLQQHSTPALLGMGVKQWRDGD 231

Query: 672 LACRXC 689
             C  C
Sbjct: 232 WMCTNC 237


>At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic
           subunit, putative similar to nClpP5 GI:5360595 from
           [Arabidopsis thaliana]
          Length = 330

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 326 SSLNTFCLLFSSGPSNKREIIFKSKSILQSPR 231
           +++   CLL S+G   KR ++  +K+++Q PR
Sbjct: 206 AAIGQACLLLSAGTKGKRFMMPHAKAMIQQPR 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,588,276
Number of Sequences: 28952
Number of extensions: 383347
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)