Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0635
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              29   2.0  
SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)         27   8.2  

>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 98 QASAADTRPSHTKILRLPILFGLK 27
          +ASAAD RP HT  L  P++ G K
Sbjct: 9  EASAADRRPGHTARLHSPLMAGPK 32


>SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 140 GDNHYRLIVNGEVERYAPDQR-YVVTLVGSR 229
           G++  RL+  G VERY+P+ R + V+L   R
Sbjct: 193 GNDTARLVYTGGVERYSPESRAFAVSLFDQR 223


>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
          Length = 966

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 131 KSPGDNHYRLIVNGEVERYAPDQRYV 208
           +S GD   R++VN E +R  P + YV
Sbjct: 669 RSQGDTESRIVVNFETKRAIPHKHYV 694


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,102
Number of Sequences: 59808
Number of extensions: 311739
Number of successful extensions: 728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)