Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0635
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.93 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 379  VEADDLPKTEVQVMWKAPP 435
            +  DDL +  ++V WK PP
Sbjct: 983  IRVDDLDQHTLKVTWKPPP 1001


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 217 GRFPHS*RXTTVXGFKIILDPLNPDTRRAPSKQGQF 324
           GR  +S R T   G  + L+    DT+R P + G F
Sbjct: 116 GRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSF 151


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 70  ATLKFSDCPFYLGLRRTDPTSPP 2
           AT +    PF +G RRT P  PP
Sbjct: 398 ATARNVVAPFLIGSRRTSP--PP 418


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 92  WPDELNPG 115
           WP+EL PG
Sbjct: 178 WPEELEPG 185


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 92  WPDELNPG 115
           WP+EL PG
Sbjct: 178 WPEELEPG 185


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 92  WPDELNPG 115
           WP+EL PG
Sbjct: 178 WPEELEPG 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,505
Number of Sequences: 438
Number of extensions: 2788
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)