Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0634
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       40   0.002
04_03_0649 - 18402976-18403220,18403305-18404499                       37   0.019
10_08_0011 + 14088375-14089241                                         33   0.40 
10_08_0009 + 14075929-14076789                                         31   1.6  
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141...    29   3.7  
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296...    28   8.6  
10_08_0007 + 14044844-14045767                                         28   8.6  
03_06_0754 - 36025579-36027000                                         28   8.6  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 380 YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 490
           +S M ++K+ R +FI S ++  +   FDGLDL W +P
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
 Frame = +2

Query: 308 SLRSKHPDVKFMVAVG-GWAEGGSK----------YSHMVAQKSTRMSFIRSVVDFLKKY 454
           ++++K+  VK ++++G G   GG+           ++ M A  ++R +FI + V   ++ 
Sbjct: 99  AVKAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVAREN 158

Query: 455 DFDGLDLDWEYPGAA 499
            FDGLD+ W +P +A
Sbjct: 159 GFDGLDVAWRFPASA 173


>10_08_0011 + 14088375-14089241
          Length = 288

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 257 IIDPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRS 430
           +  P  D       +  ++++ HP+V  MV +GG +  +    +    +  S   + + S
Sbjct: 56  VFSPYWDTANLSPADVAAVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVAS 115

Query: 431 VVDFLKKYDFDGLDLDWEY 487
           V   +  Y  DG+D+D+E+
Sbjct: 116 VSGIIDAYGLDGVDVDYEH 134


>10_08_0009 + 14075929-14076789
          Length = 286

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +2

Query: 314 RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVD----FLKKYDFDGLDLDW 481
           ++ HP++  ++A+GG     +  +   A  S+  +++R+  D     +  Y  DG+D+D+
Sbjct: 75  KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134

Query: 482 EY 487
           E+
Sbjct: 135 EH 136


>03_02_0687 +
           10413338-10413430,10413538-10413934,10414040-10414168,
           10414370-10414517,10414647-10415925
          Length = 681

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 505 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 365
           PV GT +  V+   V  I  Q+    + E HP  + G+H  VL   F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596


>11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,
            2964572-2964675,2964791-2964877,2965378-2965414,
            2965729-2965801,2965963-2967494
          Length = 1169

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 27/96 (28%), Positives = 41/96 (42%)
 Frame = +2

Query: 212  DLFLYWRHREIKRSFIIDPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHM 391
            +L L  +  E K  F+I+   DVD++ +  F S     P +   V V G  E  +K+   
Sbjct: 925  ELSLNSKASEGKYLFVIEFIWDVDEAAWTKFQSYLQNIPGIGIKVVVIGTTEDIAKFGTT 984

Query: 392  VAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAA 499
               +  R+S       + K   F  LD D E+P  A
Sbjct: 985  QPIRVKRLS-EEEFWYYFKALAFGSLDPD-EHPKLA 1018


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 308 SLRSKHPDVKFMVAVGGWAEGGSK-YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWE 484
           S++  +P+V+  V++GG        + ++ +  S   + + S+   ++  + DG+D+D+E
Sbjct: 95  SIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDGIDIDYE 154


>03_06_0754 - 36025579-36027000
          Length = 473

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 258 LSILSW-T*IRVVSVTSHPSAPNTPMSSSWSRLAVGLKA 371
           ++I SW T +R   ++S PS P++  SSSW    VG+ A
Sbjct: 1   MAIESWLTKVRSAIISSKPS-PSSSSSSSWRSKTVGILA 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,152,943
Number of Sequences: 37544
Number of extensions: 595989
Number of successful extensions: 1550
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)