Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0634
(881 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 4e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 73 4e-13
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 73 4e-13
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 69 7e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 66 5e-11
SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0) 31 1.6
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 30 2.2
SB_46531| Best HMM Match : Cu_amine_oxid (HMM E-Value=0) 30 2.2
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 29 6.6
SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88) 29 6.6
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 75.8 bits (178), Expect = 4e-14
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Frame = +2
Query: 293 FRNFTSLRSKHPDVKFMVAVGGWA-EGG--SKYSHMVAQKSTRMSFIRSVVDFLKKYDFD 463
++ L+ K+P +K ++AVGGW E G S +S MVA KS R +FI S++ KYDFD
Sbjct: 455 YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFD 514
Query: 464 GLDLDWEYPGAADRG 508
G DLDWEYP A RG
Sbjct: 515 GFDLDWEYP--ASRG 527
Score = 48.0 bits (109), Expect = 1e-05
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +3
Query: 123 VCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKSSEV 254
VCYF+NWA YRP ++ +DI LCTH++Y+F + ++++
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLLCTHIVYAFAKIDPATNKI 444
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 520 DKDKFLYFVQELKRAFIRAGRXWE-----LTAAVPLANFRLMEGYHVPELCXELDAIHVM 684
DK F +E+ AF R + LTAAV + + Y V +L LD I++M
Sbjct: 533 DKQHFTILCEEMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHKLAGILDWINLM 592
Query: 685 SYD 693
+YD
Sbjct: 593 TYD 595
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 72.5 bits (170), Expect = 4e-13
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +2
Query: 281 DKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 454
D ++ +L+ +P +K +AVGGW E S +S MVA K R FI+S ++ L+ +
Sbjct: 74 DHELYQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTH 133
Query: 455 DFDGLDLDWEYPG 493
FDGLDLDWEYPG
Sbjct: 134 GFDGLDLDWEYPG 146
Score = 70.9 bits (166), Expect = 1e-12
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Frame = +2
Query: 293 FRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDG 466
++ +L+ +P +K +AVGGW E S +S MVA K R FI+S ++ L+ FDG
Sbjct: 463 YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDG 522
Query: 467 LDLDWEYPG 493
LDLDWEYPG
Sbjct: 523 LDLDWEYPG 531
Score = 52.4 bits (120), Expect = 5e-07
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 DEP*PLKMRAIFA-TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDL 200
D P P I A LA+L C R VCY++NW+ YRP G + EDI L
Sbjct: 376 DGPLPPNTSLIMARVLAILILCFVPFAVSEYVR-VCYYTNWSQYRPKGGTFWPEDIDPHL 434
Query: 201 CTHLIYSF 224
CTH+I+SF
Sbjct: 435 CTHVIHSF 442
Score = 52.0 bits (119), Expect = 6e-07
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +3
Query: 66 LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 245
LAVL CA V + R CY++NW+ YRP G + EDI LCTH+++SF V + +
Sbjct: 7 LAVLG-CALSVTASEYVR-GCYYTNWSQYRPKGGTFWPEDIDPFLCTHILFSFAKVNQTT 64
Query: 246 SEVSL 260
++ +
Sbjct: 65 HKLDI 69
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +1
Query: 505 GCSFSDKDKFLYFVQELKRAFIRAGRXWE-----LTAAVPLANFRLMEGYHVPELCXELD 669
G SDK +F QEL+ AF + LTAAV + + + Y + + LD
Sbjct: 535 GSPKSDKGRFTLLCQELRDAFEAEAKDSGKERLLLTAAVAAGLWTIKDAYDIEGISKPLD 594
Query: 670 AIHVMSYD 693
I+VM+YD
Sbjct: 595 WINVMTYD 602
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +1
Query: 505 GCSFSDKDKFLYFVQELKRAFIRAGRX-----WELTAAVPLANFRLMEGYHVPELCXELD 669
G SDK +F +EL+ AF + LTAAV + + Y + ++ LD
Sbjct: 150 GSPKSDKGRFTLLCRELREAFEAEAKASGKERMLLTAAVAAGLWTIKGAYDIADIAEPLD 209
Query: 670 AIHVMSYD 693
I++M+YD
Sbjct: 210 WINLMTYD 217
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 72.5 bits (170), Expect = 4e-13
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 281 DKSGFRNFTSLRSKHPDVKFMVAVGGW--AEGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 454
D + F +L+ K+P++K ++AVGGW S +S MV +TR FI SV+ L+ +
Sbjct: 71 DDKLYPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTW 130
Query: 455 DFDGLDLDWEYPGAADRG 508
FDGLDLDWEYP A RG
Sbjct: 131 GFDGLDLDWEYP--ATRG 146
Score = 60.5 bits (140), Expect = 2e-09
Identities = 31/71 (43%), Positives = 42/71 (59%)
Frame = +3
Query: 63 TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEK 242
TL VLA A + R VCY +NW+ YR G ++ EDIP DLCTHL+YSF + +K
Sbjct: 5 TLLVLAVAACATGNYVR---VCYHTNWSQYRQGRAKFWPEDIPADLCTHLMYSFAKINQK 61
Query: 243 SSEVSLSILSW 275
+ L++ W
Sbjct: 62 N---ELAMYEW 69
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 68.5 bits (160), Expect = 7e-12
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Frame = +2
Query: 281 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSK--YSHMVAQKSTRMSFIRSVVDFLKKY 454
D ++ F L+ K+P +K ++AVGGW K +S MV ++R FI S + L+++
Sbjct: 183 DDKLYKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQW 242
Query: 455 DFDGLDLDWEYPG 493
+FDG DLDWEYPG
Sbjct: 243 NFDGFDLDWEYPG 255
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +1
Query: 505 GCSFSDKDKFLYFVQELKRAF-IRAGRXWE----LTAAVPLANFRLMEGYHVPELCXELD 669
G DK +F QEL AF + A + LTAAV + + Y V ++ LD
Sbjct: 259 GSDPGDKQRFTILCQELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILD 318
Query: 670 AIHVMSYD 693
I++M+YD
Sbjct: 319 LINLMAYD 326
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +2
Query: 281 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDF 460
D + ++ L+S ++K ++AVGGW G + MV+ S R FI + FL+ + F
Sbjct: 74 DAAMYKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMF 132
Query: 461 DGLDLDWEYPGA 496
DGLDLDWEYPGA
Sbjct: 133 DGLDLDWEYPGA 144
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/65 (36%), Positives = 42/65 (64%)
Frame = +3
Query: 66 LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 245
L +L ++L S S R VCY++NWA YR G+ +Y ++I LCTH++Y+F + +
Sbjct: 7 LPLLVVPSSLFASASYFR-VCYYTNWAQYR-GLAKYTPDNIDPSLCTHIVYAFAKMNADN 64
Query: 246 SEVSL 260
S++++
Sbjct: 65 SKLAM 69
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 520 DKDKFLYFVQELKRAF----IRAGRX-WELTAAVPLANFRLMEGYHVPELCXELDAIHVM 684
DK +F QEL AF G+ LTAAV + GY + L LD I++M
Sbjct: 151 DKHRFTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWINLM 210
Query: 685 SYD 693
SYD
Sbjct: 211 SYD 213
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 65.7 bits (153), Expect = 5e-11
Identities = 30/68 (44%), Positives = 42/68 (61%)
Frame = +2
Query: 293 FRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLD 472
++ L+S ++K ++AVGGW G + MV+ S R FI + FL+ + FDGLD
Sbjct: 2 YKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMFDGLD 60
Query: 473 LDWEYPGA 496
LDWEYPGA
Sbjct: 61 LDWEYPGA 68
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 520 DKDKFLYFVQELKRAF----IRAGRX-WELTAAVPLANFRLMEGYHVPELCXELDAIHVM 684
DK +F QEL AF G+ LTAAV + GY + L LD I++M
Sbjct: 75 DKHRFTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWINLM 134
Query: 685 SYD 693
SYD
Sbjct: 135 SYD 137
>SB_15557| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
Length = 1009
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 164 WTLWHRRHPRGFVYPLDLFLYWRH 235
W +HR HP FVYPL +Y H
Sbjct: 477 WYAFHRDHPPMFVYPLPFEIYIDH 500
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 201 CTHLIYSFIGVTEKSSEVSLSIL-SWT*IRVVSVTSHPSAPNTPMSSSWSRLAVGLKAAP 377
C+ + +T S+ ++ SIL S T S+ P+ P+ +W+ L P
Sbjct: 1318 CSQWGMAITRITLISNAITFSILASHTSFGTESLAPSPTPSKEPLGGTWANTRSSLTTTP 1377
Query: 378 STHTWWPRRALGCPSSEALSTS*RNMTST 464
S T A P+S +S + +N TS+
Sbjct: 1378 SFPTTSLMLAPVTPASLIISQATKNATSS 1406
>SB_46531| Best HMM Match : Cu_amine_oxid (HMM E-Value=0)
Length = 900
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 164 WTLWHRRHPRGFVYPLDLFLYWRH 235
W +HR HP FVYPL +Y H
Sbjct: 314 WYAFHRDHPPLFVYPLPFEIYIDH 337
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 28.7 bits (61), Expect = 6.6
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = -2
Query: 478 VQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAFSPTANRDH--ELD-IGVFGAEG 308
+ I T V F E D AS G + G G +S +R+H L+ +G F A
Sbjct: 518 LSIVTSNVDFTSESD-ASMLGWGACCNGQST---GGLWSEVESRNHINYLETLGAFFALK 573
Query: 307 CEVTETTLIYVQLRIDNETSLDF 239
C + T ++QL++DN T++ +
Sbjct: 574 CFARDVTCKHIQLKLDNTTAVSY 596
>SB_5051| Best HMM Match : DUF1193 (HMM E-Value=0.88)
Length = 634
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 708 GPVSPMCIRFIQTPSRPIGLTRNLNVEXWVLXLWERE 818
G V + R ++ S+ I + RNLNVE L WE E
Sbjct: 591 GCVIDIAYRITKSRSKQISVRRNLNVEQRELEQWELE 627
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,226,631
Number of Sequences: 59808
Number of extensions: 651382
Number of successful extensions: 1612
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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