Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0634
(881 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 61 1e-09
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 58 6e-09
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 57 1e-08
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 54 2e-07
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 52 7e-07
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 50 2e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 49 5e-06
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 44 1e-04
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 40 0.003
At1g78910.1 68414.m09199 pseudouridine synthase family protein l... 31 1.3
At5g53510.1 68418.m06650 oligopeptide transporter OPT family pro... 30 1.8
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 30 1.8
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam... 29 4.1
At5g09540.1 68418.m01105 DNAJ heat shock N-terminal domain-conta... 28 7.2
At1g24300.1 68414.m03066 GYF domain-containing protein contains ... 28 9.5
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +2
Query: 293 FRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 469
F FT +++ ++P VK ++++GG + Y+ M + ++R SFI S + + Y F GL
Sbjct: 76 FSTFTQTVQRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGL 135
Query: 470 DLDWEYPGAA 499
DLDWEYP +A
Sbjct: 136 DLDWEYPSSA 145
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 58.4 bits (135), Expect = 6e-09
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 281 DKSGFRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYD 457
+++ F FT +++ ++P VK ++++GG ++ M + +R SFI+S + + Y
Sbjct: 51 NQAPFHAFTETVQQRNPHVKTLLSIGGGNADKDAFASMASNPDSRASFIQSTITVARSYG 110
Query: 458 FDGLDLDWEYP 490
F GLDLDWEYP
Sbjct: 111 FHGLDLDWEYP 121
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 293 FRNFTSL-RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 469
F NFT + + K+P V+ ++++GG S ++ M + ++R SFI S + + Y FDGL
Sbjct: 65 FSNFTKIVKKKNPHVQTLLSIGGRNADKSAFASMASNPTSRKSFIWSAISSARYYRFDGL 124
Query: 470 DLDWEYP 490
DL W+YP
Sbjct: 125 DLVWKYP 131
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 293 FRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 469
F +FT +++ K+ DV+ ++++GG + + M + R +FI S +D +K DF GL
Sbjct: 72 FSSFTETVKEKNTDVQTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGL 131
Query: 470 DLDWEYP 490
DL WEYP
Sbjct: 132 DLAWEYP 138
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 299 NFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDL 475
+FT +++ K+ DV+ ++++GG + + M + R +FI S +D +K DF GLDL
Sbjct: 66 SFTHTVKDKNTDVQTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDL 125
Query: 476 DWEYP 490
WEYP
Sbjct: 126 AWEYP 130
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 293 FRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGL 469
F FT +++ ++P VK ++++GG S ++ M + +R +FI S + + F GL
Sbjct: 67 FSTFTETVKIRNPQVKTLLSIGGKNANNSAFASMASNHQSRKTFIDSWIFIARSNGFHGL 126
Query: 470 DLDWEYP 490
DL WEYP
Sbjct: 127 DLAWEYP 133
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +2
Query: 281 DKSGFRNFT-SLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYD 457
+K F FT ++R ++P VK ++++GG ++ M + ++R FI S + +
Sbjct: 70 NKPKFSTFTQTVRRRNPTVKTLLSIGGDFTYNFAFASMASNPTSRKLFISSSIKLARSCG 129
Query: 458 FDGLDLDWEYP 490
F GLDL+W+YP
Sbjct: 130 FHGLDLNWKYP 140
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 389 MVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 490
M + R SFI S + + Y FDGLDLDWEYP
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYP 34
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 374 SKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 490
S ++ +V+ +++R SFI S + + F GLDL WEYP
Sbjct: 74 STFTEIVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112
>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 478
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = -3
Query: 705 LPRRIIRHHVDSVQFXTQLWYMISLHQPEISKRYGSSQLPSST 577
+P R I+H+ + +Q ++W +S+ + ISKRY + +PS T
Sbjct: 127 IPMRKIKHN-EVMQIGDKIWLPVSIAEMRISKRYDT--IPSGT 166
>At5g53510.1 68418.m06650 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 741
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 399 WATMCEYLEPPSAQPPTATMNLTSG 325
WAT+ YL P A P AT+N+T G
Sbjct: 272 WATISSYLGSPLASPLFATINVTIG 296
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc
finger (ZZ type) family protein contains Pfam profiles
PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 306 HPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRA 407
HP + S+S+S LAVG+K+ S WP ++
Sbjct: 534 HPQNIGSDSSNSFSNLAVGVKSESSPQGQWPSKS 567
>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
PF03467: Smg-4/UPF3 family; similar to hUPF3B
(GI:12232324) [Homo sapiens]
Length = 482
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/85 (31%), Positives = 37/85 (43%)
Frame = -3
Query: 315 RRDVKLRKPLLSTSNSGSIMKLRLISR*RQ*RNKSSGYTNPRGCLRCHNVQRRVGTPPNY 136
RRD +PL S N+G + R + N S G+T G R H+ RRVG
Sbjct: 390 RRDGSEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSAR-HS-SRRVGGR--- 444
Query: 135 *SNKRCALCCPTELMRRNSPGQPTS 61
+ K + + RR S G P+S
Sbjct: 445 -NRKEEVVIGEGKTSRRGSGGGPSS 468
>At5g09540.1 68418.m01105 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 280
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 339 SWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTST 464
SW+ VGL + P+T W P L + ++ S N+ +T
Sbjct: 223 SWAMFPVGLTSHPNTSNWSPISHLSVCTGQSSSDQQSNLKAT 264
>At1g24300.1 68414.m03066 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1417
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 436 DNASDEGHPSALLGHHV*VLGAAFS-PTANRDHELDIGVFGA 314
DN S + + S LLG H LGAA S P N G FGA
Sbjct: 299 DNGSMKNNDSGLLGSHNGGLGAASSVPRLNSVASESYGSFGA 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,144,755
Number of Sequences: 28952
Number of extensions: 443248
Number of successful extensions: 1066
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -