Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0632
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 181 1e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 6e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 96 7e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 1e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.010
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.017
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.66
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 23 4.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.6
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 27 4.6
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 26 6.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 6.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 6.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.1
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 6.1
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.1
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 8.1
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 181 bits (441), Expect = 1e-46
Identities = 97/152 (63%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Frame = +3
Query: 234 GTEGLLCGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 413
G + GDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 414 APLNPKANREKMTQIMFETFNTPAMYVAIQAV-SRCTRPVVPPVSCWTPATVSPTPCPST 590
APLNPK+NREKMTQI+FETFN PA YVAIQAV S + + V+ T P
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT-VPIY 166
Query: 591 KDTHSPTPSCVWT*PVATFTDYLMKILTERGY 686
+ P TDYLMKIL ERGY
Sbjct: 167 EGYALPHAIMRLDLAGRDLTDYLMKILMERGY 198
Score = 160 bits (388), Expect = 3e-40
Identities = 85/115 (73%), Positives = 90/115 (78%)
Frame = +2
Query: 509 LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLHRLPHEDPHRARLL 688
LSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDL +
Sbjct: 140 LSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYT 199
Query: 689 RSLPTAEREIVRDIKEKLCYVALDLSRKWPTAASSSSLEKFTNFPDGQVITIGNE 853
S TAEREIVRDIKEKLCYVALD ++ TAA SSSLEK PDGQVITIGNE
Sbjct: 200 FS-TTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNE 253
Score = 110 bits (265), Expect = 2e-25
Identities = 48/53 (90%), Positives = 52/53 (98%)
Frame = +1
Query: 97 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYV 54
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (245), Expect = 6e-23
Identities = 42/97 (43%), Positives = 69/97 (71%)
Frame = +3
Query: 219 RDGRYGTEGLLCGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 398
+ G + ++ GDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 399 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 509
+LLTE P+NP ANREKM + MFE + +YVAIQAV
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAV 139
Score = 96.7 bits (230), Expect = 4e-21
Identities = 52/115 (45%), Positives = 72/115 (62%)
Frame = +2
Query: 509 LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLHRLPHEDPHRARLL 688
LSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD R R
Sbjct: 140 LSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYA 199
Query: 689 RSLPTAEREIVRDIKEKLCYVALDLSRKWPTAASSSSLEKFTNFPDGQVITIGNE 853
+ TA+ E VR++KEKLCYV+ DL + ++ L + PDG+VI +G+E
Sbjct: 200 FN-RTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSE 253
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 103 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 207
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.9 bits (228), Expect = 7e-21
Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 GDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 431
G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 77 GNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPP 136
Query: 432 ANREKMTQIMFETFNTPAMYVAIQAV 509
NRE +IMFE+FN +Y+A+QAV
Sbjct: 137 ENRENTAEIMFESFNCAGLYIAVQAV 162
Score = 57.2 bits (132), Expect = 3e-09
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 536 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL-HRLPHEDPHRARLLRSLPTAER 712
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+ + + R SL TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 713 EIVRDIKEKLCYVALDLSRKW 775
IKE+ CYV D+ +++
Sbjct: 240 -----IKEECCYVCPDIVKEF 255
Score = 42.3 bits (95), Expect = 9e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 115 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 255
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.1 bits (226), Expect = 1e-20
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Frame = +2
Query: 509 LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLHRLPHEDPHRARLL 688
L+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+ D + +L
Sbjct: 145 LALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDV-----TDYLQLQLR 199
Query: 689 RS----LPTAEREIVRDIKEKLCYVALDLSRKWPTAASSSSLEKFTNFPDGQVITIGNE 853
+S + +AE+EIVR+IKEK CYVA D + + PD Q IT+G E
Sbjct: 200 KSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTE 258
Score = 93.9 bits (223), Expect = 3e-20
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Frame = +3
Query: 246 LLCGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 422
+ G EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 423 NPKANREKMTQIMFETFNTPAMYVAIQAV 509
N+EK+ + +ET N PA+ ++Q V
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQPV 144
Score = 61.3 bits (142), Expect = 2e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +1
Query: 115 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFV 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 4e-11
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +3
Query: 285 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 464
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 465 ETFNTPAMYVAIQ 503
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 100 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 201
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 1e-10
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = +3
Query: 219 RDGRYGTEGLLCGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 395
RD + L G++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 396 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 509
P+ +TE NP R MT+++FE +N P++ I +
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGL 154
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 115 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 210
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 533 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 637
++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +3
Query: 309 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 488
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 489 YVAIQAV 509
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 100 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 201
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +2
Query: 542 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL-HRLPHEDPHRARLLRSLPTAEREI 718
+V+DSG +H +P+ + A+ R+D+ G+ L + L +R + E I
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME----ETYI 214
Query: 719 VRDIKEKLCYVA 754
V +IKE +CYV+
Sbjct: 215 VNEIKESVCYVS 226
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.017
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 300 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 467
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 468 TFNTPAMYVAIQ 503
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
Score = 31.1 bits (67), Expect = 0.22
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 509 LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLHRLPHEDPHRARLL 688
+ LYA G G+V+D G + PI +G + A +L L GR + H LL
Sbjct: 186 MGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR------YMTQHLQNLL 239
Query: 689 R-SLPT 703
R SLPT
Sbjct: 240 RESLPT 245
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 360 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 503
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.66
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 332 IPVSDDSVFDGVFEGQDTSFALCLIST*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 153
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 152 PALHIP 135
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 254 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 96
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 525 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 617
P VP S P+ P P PS++ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 23.4 bits (48), Expect(2) = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 775 PFPAQIKSDVAQLLLDVTNDFPLGGW 698
PFP ++ Q L++ TND GGW
Sbjct: 115 PFPKGWAPEIIQYLINHTNDD--GGW 138
Score = 21.4 bits (43), Expect(2) = 4.6
Identities = 10/31 (32%), Positives = 12/31 (38%)
Frame = -2
Query: 583 GHGVGDTVAGVQHDTGGTTGRVQRETAWMAT 491
GH V H+ GG G W+AT
Sbjct: 166 GHPVATRARNRLHELGGAIGCPHWGKFWLAT 196
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 534 PPVSCWTPATVSPTPCPSTKDTHSP 608
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 719 VRDIKEKLCYVALDLSRKWPTAASSSSLEKFTNFPDGQV 835
+R I++ L + L L++ T ASSSS+EK + GQ+
Sbjct: 258 IRCIEKNLKLILLHLAKS--TGASSSSVEKIHAYLSGQI 294
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 701 TAEREIVRDIKEKLCYVALDLSRKW 775
T ER + + +KE +C D SR W
Sbjct: 501 TTERTVPKTVKEAICDYNSDTSRTW 525
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 402 LLTEAPLNPKANREKMTQIMFETFN 476
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 507 VSRCTRPVVPPVSCWTPATVSPTPCPST 590
VSR T+P+ S +P VSP PST
Sbjct: 263 VSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 469 HST-RPPCTSPS---KPSLAVRVRSYHRYRAGLRRRCLPHRAHLRR 594
HST R TSP+ + R RS HR+ G RR P+R HL R
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRH--GSHRRHEPYRTHLSR 164
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 236 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 144
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +2
Query: 659 HEDP-HRARLLRSLP-----TAEREIVRDIKEKLCYVALDLSR 769
H DP H LRSL +AE IVRDI+EK + D R
Sbjct: 576 HRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAGR 618
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 567 SPTPCPSTKDTHSPTPSCVWT*PVATFTDY 656
SP+P P++ D S T W+ + F D+
Sbjct: 244 SPSPIPNSNDNDSQTRRSSWSSIASAFNDF 273
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 862 NGTFVSDSDDLTVGKVRKLLEGAAGCSGWPFPAQIKSDVAQLLLDV 725
N V+ DD++VGK R L G G +I A L LD+
Sbjct: 131 NVELVAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 778 WPFPAQIKSDVAQLLLDVTND 716
W +PA K DVAQL+ ND
Sbjct: 98 WYYPANAKVDVAQLVEPYRND 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,796,111
Number of Sequences: 5004
Number of extensions: 85595
Number of successful extensions: 309
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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