Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0632
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              43   3e-06
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.92 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 21/25 (84%), Positives = 21/25 (84%)
 Frame = +2

Query: 779 TAASSSSLEKFTNFPDGQVITIGNE 853
           TAASSSSLEK    PDGQVITIGNE
Sbjct: 4   TAASSSSLEKSYELPDGQVITIGNE 28


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 259 SPHKSPSVPYRPSRPDGGAFPRSRG 185
           SPH+SP  P R S P+    P   G
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGG 50


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 291 GSGYLFCSVPHLHIRVLLSHTDHHALMAGPSHDRGEHGARSIISC 157
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 493 SPSKPSLAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHP 618
           S ++ S ++  +++HR        C P   +L +I + P HP
Sbjct: 55  SGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 372  LRVAPEEHPVLLTEAPLNPKANREKM 449
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 201 KAPPSGRDGRYGTEGLLCGDEAQSKRGILTLKYPIEHGIVTNWDD 335
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 201 KAPPSGRDGRYGTEGLLCGDEAQSKRGILTLKYPIEHGIVTNWDD 335
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = -3

Query: 261 HLHIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 136
           H HI     H  HH+  A P H      A S       + HT
Sbjct: 423 HSHIHATPHH--HHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,721
Number of Sequences: 438
Number of extensions: 6406
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)