Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0631
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    28   1.5  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.5  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   7.8  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   7.8  

>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 486 ILSNPSSIXKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFN 322
           ++SNPS++  D+     VCPP+E   S++   T+  +   L + T   +    FN
Sbjct: 419 VVSNPSTLDDDY-NYMFVCPPEEYTYSTDNVRTDSLDLQSLPTPTLEQLESVPFN 472


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 155 NCCSPCEQIG*ELGKIVEHLE 93
           NCC   +Q+G E  KI+E+++
Sbjct: 213 NCCEAIQQLGEEKQKIIEYVQ 233


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 507 LYAVIKFILSNPSSIXKDFLRASSVCP 427
           L++ ++ IL +P+S     LRA  +CP
Sbjct: 545 LFSTLRIILEHPNSSRLQKLRAPGLCP 571


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 480 SNPSSIXKDFLRASSVCPPDERYASSNEWYTEKGEK 373
           SN S+  K+  +A +  PP   ++ ++E   EKGE+
Sbjct: 296 SNDSASRKEKPKARASTPPPLNFSRASEHRNEKGER 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,827
Number of Sequences: 5004
Number of extensions: 72582
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)