Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0631
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi...    32   0.42 
At1g62170.1 68414.m07013 serpin family protein / serine protease...    29   3.0  
At2g28920.1 68415.m03514 zinc finger (C3HC4-type RING finger) fa...    29   3.9  
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea...    29   5.2  
At1g67680.1 68414.m07723 expressed protein                             28   9.1  
At1g21060.1 68414.m02634 expressed protein contains Pfam profile...    28   9.1  
At1g15350.3 68414.m01836 expressed protein                             28   9.1  
At1g15350.2 68414.m01838 expressed protein                             28   9.1  
At1g15350.1 68414.m01837 expressed protein                             28   9.1  

>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 736

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 155 YLHTIRGHHSNHNEVSNCGIVRRFNGYQPVLLQNDSSKK-LNPEARTALYNGQLGFT 322
           Y+H  +G  +N     N    R++ G     ++ D  KK  NP   T L+NG+LGFT
Sbjct: 219 YVHPWKGILANMKRTFN-EKTRKYAGESGSKIREDLIKKGFNPHKVTPLWNGRLGFT 274


>At1g62170.1 68414.m07013 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           GI:9937311 from [Cucurbita maxima]; contains Pfam
           profile PF00079: Serpin (serine protease inhibitor)
          Length = 433

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 341 INDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALR 451
           I+    + N  FSP S+  +L +   SSGG+  E LR
Sbjct: 83  ISSVAKNSNFVFSPASINAALTMVAASSGGEQGEELR 119


>At2g28920.1 68415.m03514 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 145

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 168 LEDIIRTTMRCLIVVLFVVSTVTSQCFYKMT 260
           + D++R  +RC  V  F V  + S CFYK+T
Sbjct: 102 VNDVVRVLVRCKHV--FHVDCIDSWCFYKLT 130


>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to En/Spm-like transposon protein GI:2739374
           from [Arabidopsis thaliana]; no characterized homologs
          Length = 471

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 681 VVTGSARIFPEIQSLEIFGKEIKHALSHIKIISCEQFVRARKLITIAVVVYTTSS 517
           V TGSA    ++   E+ GKE+KH L  + ++  E  V A  +     VVY  SS
Sbjct: 301 VFTGSADGTLKVWKREVQGKEMKHVLVQV-LMKQENAVTALAVNLTDAVVYCGSS 354


>At1g67680.1 68414.m07723 expressed protein
          Length = 664

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 406 TCVSLIRRTN*RSSEEIFXNRRWIGQDKLND 498
           T  SLI   N   +E++    R IGQ+ LND
Sbjct: 197 TACSLIENNNYADAEQLLLTARRIGQETLND 227


>At1g21060.1 68414.m02634 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 505

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
 Frame = +2

Query: 116 LILNQFARKENNSYLHTIRGHHSNHNEVSNCGIV---RRFNGYQPVLLQNDSSKKLNPEA 286
           L+ NQF  K   S + ++  +H   +  S C  +   R F      L   + S+ ++  +
Sbjct: 109 LVSNQFLPKSEQSDVTSVFSYHYQASPASECSSLCPPRSFQASLKALSAREKSRYVS-SS 167

Query: 287 RTALYNGQLGFTLNLFNTINDAVPDDNIFFSPFSVYHSL-LLAYLSSGGQTEEALRKSLX 463
            T L    LG TL + N  N +   ++I     SVY +L   A ++S  Q   +   S+ 
Sbjct: 168 HTTL-GDLLGSTLIVDNIANPSRLSEDILRCICSVYCTLSSKARINSCLQASPSSPSSVS 226

Query: 464 IEDGLDKIN 490
            +   D +N
Sbjct: 227 SKATFDSLN 235


>At1g15350.3 68414.m01836 expressed protein
          Length = 108

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 469 RWIGQDKLNDCV*IDKRARGINNNSDSYE-FTSANKLF 579
           RW+G+DK N+ V  ++ A+ +N N+ +Y+    +NKLF
Sbjct: 48  RWVGKDKPNNPVDHNQGAK-LNWNTATYDSLLGSNKLF 84


>At1g15350.2 68414.m01838 expressed protein
          Length = 154

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 469 RWIGQDKLNDCV*IDKRARGINNNSDSYE-FTSANKLF 579
           RW+G+DK N+ V  ++ A+ +N N+ +Y+    +NKLF
Sbjct: 94  RWVGKDKPNNPVDHNQGAK-LNWNTATYDSLLGSNKLF 130


>At1g15350.1 68414.m01837 expressed protein
          Length = 154

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 469 RWIGQDKLNDCV*IDKRARGINNNSDSYE-FTSANKLF 579
           RW+G+DK N+ V  ++ A+ +N N+ +Y+    +NKLF
Sbjct: 94  RWVGKDKPNNPVDHNQGAK-LNWNTATYDSLLGSNKLF 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,038,131
Number of Sequences: 28952
Number of extensions: 367604
Number of successful extensions: 981
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)