Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0630
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.34
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 29 0.60
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.79
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 1.8
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 27 4.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 4.2
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 5.6
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 26 5.6
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 26 7.4
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 7.4
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 26 7.4
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 7.4
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 7.4
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 9.7
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 303 SRQWRFSMEWGFYMER*SERNSDSLERAGSVSNGDSIGRGDSRADKFSLGVKVSLGLG 130
+ +WRF ++ E +E SLE +V NGD+I + + L + GLG
Sbjct: 35 NNEWRFKNAGEYFDEDNNEEEYPSLESLKTVGNGDTIQDEEEDFEYSKLQARPLTGLG 92
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 71 ELQNNRISSPAKEFELFANSPKPSETFTPKENLSARESPLPIESP 205
+L+N+ + SP KE E+ + KP T EN + P+E P
Sbjct: 103 QLKNSTLDSP-KEVEVNSEVVKPDSATTENENRYVNQYNYPVEPP 146
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.1 bits (62), Expect = 0.79
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 59 QNFDELQNNRISSPAKE---FELFANSPKPSETFTPKENLSARESPLPIESPLLTEP 220
+N + + N +S A + EL P P E P E + E PLP E PL EP
Sbjct: 75 ENLESISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVP--EEPLPGEPPLPDEP 129
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 77 QNNRISSPAKEFEL---FANSPKPSETFTPKENLSARESPLPIESPLLTEP 220
++++ S+PA F + A S + LS PLPI SP LT P
Sbjct: 189 ESDQDSTPATPFPMPMHLAEETATSPEISDAPPLSGNVDPLPINSPPLTNP 239
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 525 QLAGGKYWVVIDCGKWMVCLNGRFRFKSNIL 433
QL G+ WV I CG + + ++FK +L
Sbjct: 240 QLQSGRMWVGIFCGGVLTAILMMYKFKGAVL 270
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = +2
Query: 50 TQNQNFDELQNNRISSPAKEFELFANSPKPSETFTPKENLSARESPLPIESPLLTEPALS 229
T + + + N +P ++ +P+E+ P S+ +P P + P L LS
Sbjct: 386 TNSPIIENKEANNFLAPTSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSLPPRGLS 445
Query: 230 KES 238
+++
Sbjct: 446 EDN 448
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 224 LSKESLLRSDYLSI*NPHSMLNLHCL 301
L+KES L S SI NPH +LN CL
Sbjct: 113 LAKESQLASSAESIYNPH-ILNTFCL 137
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 164 NLSARESPLPIESPLLTEPALSKESLLRSDYLSI 265
N++ SPL LLT PA+S S+ +YLSI
Sbjct: 98 NIAEIMSPLTKPQDLLTHPAIS--SIFEQNYLSI 129
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 50 TQNQNFDELQNNRISSPAKEFELFANSPKPSETFTPKENLSARESPLPIESPLLTEPA 223
T QN E +NN +S K+ L ++S + ++ ++ PLPI+ P L A
Sbjct: 82 TGTQNV-ERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPPLESNA 138
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 62 NFDELQNNRISSPAKEFELFANSPKPSETFTPKENLSARES 184
NF + NR+ + + ELF S S+ ++P+++ + S
Sbjct: 86 NFPRVNPNRLMTSKRPNELFKTSSMSSDCYSPQKSRESLNS 126
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 234 SLERAGSVSNGDSIGRGDSRADKFSLGVKVSLGLGELA 121
S + S+S GD++ D+ KF LG+ + ELA
Sbjct: 167 SFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELA 204
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 555 TELDDSVKVTKDSRSNSPLPAEVP 626
TELD + ++ SR N P+P + P
Sbjct: 214 TELDPTQQLLTQSRKNQPVPPDSP 237
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 430 AENVTLETESTIQTDHPLPTVDDHPVFPPCQLL 528
A + +E ++T++ D P+PT + + QLL
Sbjct: 248 ASDSEIEEDATVEIDRPVPTKTEENLLSASQLL 280
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +2
Query: 68 DELQNNRISSPAK---EFELFANSPKPSETFTPKEN--LSARE 181
D + +N SP E + N+ KP +T TP EN LSAR+
Sbjct: 240 DNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSARQ 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,628
Number of Sequences: 5004
Number of extensions: 55431
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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