Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0630
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    29   4.4  
10_01_0092 - 1119203-1119502,1119612-1120412                           29   5.8  
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773           29   5.8  

>07_03_1546 +
           27602598-27602917,27602995-27603052,27603130-27603252,
           27603896-27603992,27604095-27604131,27604244-27604349,
           27604547-27604604,27604705-27604802,27604911-27605030,
           27605622-27605667,27606336-27606522,27606747-27607263,
           27607361-27607453,27608101-27608286,27608364-27608574,
           27609263-27609387,27609518-27609664,27610114-27610236,
           27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 113 ELFANSPKPSETFTPKENLSARESPLPIESPLLTEPA 223
           E F N+P+PSE    +E++S     +  E P+  EP+
Sbjct: 491 EDFFNNPQPSEASLAEESISTNGQQIEQEMPVNVEPS 527


>10_01_0092 - 1119203-1119502,1119612-1120412
          Length = 366

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 439 HSRLVVEIPTVKETLQVKDIQKEAMFLL*AVETLLVH 329
           H R ++ +PTV     V+D   EAM+ L  V  LL++
Sbjct: 75  HLRRLMRVPTVSGVFAVEDHNGEAMYTLTRVSRLLLN 111


>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
          Length = 944

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 192 QLNHHCSLNQLFLRNHYYVQITSP 263
           +L++   L  L+LR++YY+QIT P
Sbjct: 638 ELSNLSQLKYLYLRDNYYIQITIP 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,201
Number of Sequences: 37544
Number of extensions: 357577
Number of successful extensions: 1150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)