Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0630
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 30   2.0  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 613 QLRFPLPRESPIPAESHIPVDDLITSIXTALESTXPGSGSVEDQPEVEREKSDVPLER 786
           +L  PLP E P+PA + +P    +     A+ S           P+V R  + +PLER
Sbjct: 617 RLPTPLPLERPVPAVTRLPTHLPLEQPVPAVTSLPTHLPLERPLPDVTRLPTHLPLER 674



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 613 QLRFPLPRESPIPAESHIPVD 675
           +L  PLP E P+PA +H+P D
Sbjct: 489 RLPTPLPLERPVPAVTHLPTD 509



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 625 PLPRESPIPA----ESHIPVDDLITSIXTALESTXPGSGSVEDQPEVEREKSDVPLER 786
           PLP E P+PA     +H+P++  + ++ T L +  P    V   P V R  + +PLER
Sbjct: 413 PLPLERPVPAVTRLPTHLPLERPVPAV-TRLPTHLPLEQPV---PAVTRLPTHLPLER 466


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +2

Query: 116  LFANSPKPSETFTPKENLSARESPLPIESPLLTEPALSK-ESLLRSDYLSI*NPHSMLNL 292
            L+ +SP    +   K +   + SPL   SPL    +L K  SL +S  L   +P    + 
Sbjct: 691  LYKSSPLYKSSSLYKSSPLHKSSPLYKSSPLYKSSSLYKSSSLYKSSALYKSSPLYKCSS 750

Query: 293  HCLLSVLCQMSMMYQ*SLHCLQKKHCFLLNVFYLKSLLYRRNLHYQ 430
             C  S L + S +++ S    +  + +  +  Y  S LY+ +  Y+
Sbjct: 751  LCKSSSLYKSSPLHK-SSSLYKSSYLYKSSYLYKSSFLYKSSSLYK 795


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,767,195
Number of Sequences: 59808
Number of extensions: 398919
Number of successful extensions: 1471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)