Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0630
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 PSETFTP-KENLSARESPLPIESPLLTEPALSKESLLRSDY 256
           PS   TP K+ +   +SPL   +P LT     K     SDY
Sbjct: 193 PSIRITPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDY 233


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 802 LPPYGPVRGGRRIFLALLRADP 737
           LPP  P+RGG   F  L +  P
Sbjct: 375 LPPPPPIRGGEWTFDTLRKTTP 396


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 183 PLYQLNHHCSLNQLFLRNHYYVQITSP 263
           P+YQ +HH   +Q+  +   Y+   +P
Sbjct: 68  PIYQSHHHLHHHQVLYQQSPYLMYENP 94


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 718  PGSGSVEDQPEVEREKSDV 774
            PG+G   D+PE+   + D+
Sbjct: 1873 PGNGDRSDRPELSEAECDI 1891


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 718  PGSGSVEDQPEVEREKSDV 774
            PG+G   D+PE+   + D+
Sbjct: 1869 PGNGDRSDRPELSEAECDI 1887


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 50  TQNQNFDELQNNRI 91
           T+N NFD +Q N I
Sbjct: 318 TKNPNFDRMQGNPI 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,386
Number of Sequences: 438
Number of extensions: 4257
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)