Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0630
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    32   0.40 
At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identica...    30   1.6  
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    30   1.6  
At3g12720.1 68416.m01589 myb family transcription factor contain...    29   3.7  
At5g60650.1 68418.m07612 expressed protein  ; expression support...    29   4.9  
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P...    28   8.5  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
 Frame = +2

Query: 92  SSPAKEFELFANSPK--PSETFTPKENLSARESPLP--IESPLLTEPALSKESLLRSDYL 259
           S+P        NSP   PS  FT     S+   PLP  I SP +  P  S          
Sbjct: 565 STPPTPISPGQNSPPIIPSPPFTGPSPPSSPSPPLPPVIPSPPIVGPTPSSPPPSTPTPG 624

Query: 260 SI*NPHSMLNLHCLLSVLCQMSMMY--Q*SLHCLQKKHCFLLNVFYLKSLLYRRNLHYQP 433
           ++ +PH     H LL  L  +   Y      H L  +H  LL     K  ++R +LH+ P
Sbjct: 625 TLLHPH-----HLLLPQLSHLPHQYLHHRLRHILPSRHRHLLR---RKHTIHRNHLHHNP 676

Query: 434 RML 442
           R L
Sbjct: 677 RNL 679


>At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identical
           to gi:3883120 gb:AAC77823
          Length = 131

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 86  RISSPAKEFELFANSPKPSETFTPKENLSARESPLPIESPLLTEPALSKESL 241
           ++++PA   E+ + SP P+   TP+ + S    PL  +SP    PALS  ++
Sbjct: 45  KMTAPAPAPEV-SPSPSPAAALTPESSASPPSPPL-ADSPTADSPALSPSAI 94


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 592 PGRIRLYQLRFPL-PRESPIPAE---SHIPVDDLITSIXTALESTXPGSGSVEDQPEVER 759
           P  I LYQ   P  P+ SP+P     SH P  D+I +   AL +   GS        +ER
Sbjct: 48  PNNIHLYQAAPPQQPQTSPVPPHPSISHPPYSDMICTAIAAL-NEPDGSSKQAISRYIER 106

Query: 760 EKSDVP 777
             + +P
Sbjct: 107 IYTGIP 112


>At3g12720.1 68416.m01589 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 307

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 631 PRESPIPAESHIPVDDLITSIXTALESTXPGSGSVEDQ 744
           P ++ IP+++ IP++D ++S  T +    P S  ++D+
Sbjct: 195 PNQTTIPSQTVIPINDNMSSTQTMIPINDPMSSLLDDE 232


>At5g60650.1 68418.m07612 expressed protein  ; expression supported
           by MPSS
          Length = 147

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 122 ANSPKPSETFTPKENLSARES-PLPIESPLLTEPALSKESLLRSD 253
           A SP+  + F PK +LS   + P    SPL   P+ SK S++  D
Sbjct: 39  AFSPQAYDFFHPKSSLSDHNNPPKSSPSPLSLSPSPSKTSIVEPD 83


>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 762

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 83  NRISSPAKEFELFANSPKPSETFTPKENLSARESPLPIESPLLTEPALS 229
           + I+  A++F ++++ PK S +    ++ S R + LP      T P  S
Sbjct: 440 SEITEAAEDFPIYSSQPKTSVSEEVADDASGRATLLPTTQDFSTRPPAS 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,936
Number of Sequences: 28952
Number of extensions: 291455
Number of successful extensions: 1037
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)