Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0629
         (928 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    65   6e-13
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.5  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    22   5.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   7.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 24/73 (32%), Positives = 45/73 (61%)
 Frame = +2

Query: 503 RKVKYLGHVISQEGISPDEDKVRAVLDMKEPKCLQHLRTFLQTCSWFRKFIPDFAKVAEP 682
           ++VK+LGH+++  GI  D +K+ A+ +   P+  +H+R FL  C+++RKF   ++   + 
Sbjct: 499 KEVKFLGHILTINGIKADPEKISAIRNFPVPQKTKHVRAFLGLCNFYRKFCARYSAATQD 558

Query: 683 LTRLTKKSYVWEW 721
           L +L +K   W W
Sbjct: 559 LNKLLRKGEKWRW 571



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 24/83 (28%), Positives = 45/83 (54%)
 Frame = +3

Query: 261 RYVSFQAYAIWTKECATTFQRLIDRFRSGSSLKDVTVLAYFDDILVISDSYQRHLSDLRA 440
           R  ++Q      K    +F R +D    G+ +++  V+ Y DD+LV S++   HL  LR 
Sbjct: 420 RSYTYQVLPFGLKTAVGSFSRAMDVVL-GTEVREF-VVNYIDDLLVASETLNEHLEHLRQ 477

Query: 441 VFDRLRLFKLRANRDKCVFAREK 509
           VF++L+  ++  N +K  F +++
Sbjct: 478 VFEKLKQARMTINLEKSNFIQKE 500



 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
 Frame = +1

Query: 4   GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAVTKGDAYPMPRIDELLQSTK--KRL 177
           G+I+   S +++P  +  K +G  R C+D R +N+    D    P  DELL+     + +
Sbjct: 332 GVIKREASPYASPMTVGKKKDGTVRICLDARMINSKMIADCESPPAADELLRRFHEIRYM 391

Query: 178 RDEFL*PSKWLLAVQYQGSG*NGLCQPFGMYRFKRMPFGLKNA 306
               L  S W + +  +             Y ++ +PFGLK A
Sbjct: 392 STIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTA 434



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 732 QSKAFEIS*EVLTTSPXLVQADYTKPFLLRTDSSNYAFG 848
           + +AF+   ++   +  L   D  K F ++TDSS Y  G
Sbjct: 575 EQEAFDRVKDLFLEAVLLRYPDLNKIFYVQTDSSGYGLG 613


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 801 CNPLVLX*ETWSTLLKRF 748
           C+PL+   ETW  LL ++
Sbjct: 494 CDPLITLIETWMPLLPQW 511


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 86  TQNLYPPLAFGTRTVGADQADSHSSMIP 3
           T  LYP + F +RT+G D   +    +P
Sbjct: 55  TLRLYPSVHFISRTLGQDLITTGGYTLP 82


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 87  YTKPIPTISLWYQNGWCRP 31
           Y+ P PTIS   +  W RP
Sbjct: 397 YSVPEPTISTTPRPEWARP 415


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,927
Number of Sequences: 336
Number of extensions: 4382
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)