Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0629
(928 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 50 9e-06
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 33 1.9
DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein. 33 1.9
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 33 1.9
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 33 1.9
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 33 1.9
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 33 1.9
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 33 1.9
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 33 1.9
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 33 1.9
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 33 1.9
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 33 1.9
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 33 1.9
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 33 1.9
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein. 31 7.9
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 50.4 bits (115), Expect = 9e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +2
Query: 482 RQVRLC*RKVKYLGHVISQEGISPDEDKVRAVLDMKEPKCLQHLRTFLQTCSWFRKFIPD 661
++ ++C +V+YLG I Q S ++ + + + EPK + +R FL + R +IP+
Sbjct: 366 KKAQICRPQVRYLGFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFLGAAGFCRLWIPN 425
Query: 662 FAKVAEPLTRLTK 700
FA +A+PL +TK
Sbjct: 426 FAVLAKPLYEVTK 438
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 60 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 95
>DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein.
Length = 135
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 49 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 84
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 60 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 95
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 60 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 95
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 983 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 1018
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 983 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 1018
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 983 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 1018
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 43 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 78
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 43 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 78
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 43 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 78
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 59 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 94
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 60 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 95
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 32.7 bits (71), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 GIIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAV 111
G IE S W++P ++ K +G +R D R +NAV
Sbjct: 60 GHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAV 95
>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
Length = 1819
Score = 30.7 bits (66), Expect = 7.9
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 515 YLGHVISQEGISPDEDKVRAVLDMKEPKCLQHLRTFLQTCSWFRKFIPDFAKVAEPLTRL 694
YLG I +G +P + + + + P L F+ R IPD+ + PL L
Sbjct: 985 YLG--IPWDGKAPCQQVLAHLAQLTIPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSL 1042
Query: 695 TKKSYVWEW 721
K+ W+W
Sbjct: 1043 LKQKPDWQW 1051
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,043,990
Number of Sequences: 237096
Number of extensions: 2605408
Number of successful extensions: 5122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5122
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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