Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0629
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 68 8e-12
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 68 8e-12
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 68 8e-12
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 37 0.024
U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF025465-3|AAB71027.2| 380|Caenorhabditis elegans Hypothetical ... 29 6.2
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 28 8.2
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 28 8.2
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 68.1 bits (159), Expect = 8e-12
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +1
Query: 7 IIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAVTKGDAYPMPRIDELLQS-TKKRLRD 183
+I E +S WS+P VLV K +G R C+DYR++N V K +A+P+P I+ LQS K+L
Sbjct: 1056 VIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYT 1115
Query: 184 EF-L*PSKWLLAVQYQGSG*NGLCQPFGMYRFKRMPFGLKNAP 309
F + W + + + ++ + +PFGL +P
Sbjct: 1116 VFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISP 1158
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 503 RKVKYLGHVISQEGISPDEDKVRAVLDMKEPKCLQHLRTFLQTCSWFRKFIPDFAKVAEP 682
++V+YLGH ++ +G+ E K + P ++ L++FL ++RKFI +FA++A
Sbjct: 1222 KEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASS 1281
Query: 683 LTRLTKKSYVWEW 721
LT L W W
Sbjct: 1282 LTSLISAKVAWIW 1294
Score = 36.7 bits (81), Expect = 0.024
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 354 LKDVTVLAYFDDILVISDSYQRHLSDLRAVFDRLRLFKLRANRDKCVFAREK 509
L V Y DD+L+ S ++HL D++ R+R ++ KC A+++
Sbjct: 1172 LLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKE 1223
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 68.1 bits (159), Expect = 8e-12
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +1
Query: 7 IIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAVTKGDAYPMPRIDELLQS-TKKRLRD 183
+I E +S WS+P VLV K +G R C+DYR++N V K +A+P+P I+ LQS K+L
Sbjct: 959 VIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYT 1018
Query: 184 EF-L*PSKWLLAVQYQGSG*NGLCQPFGMYRFKRMPFGLKNAP 309
F + W + + + ++ + +PFGL +P
Sbjct: 1019 VFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISP 1061
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 503 RKVKYLGHVISQEGISPDEDKVRAVLDMKEPKCLQHLRTFLQTCSWFRKFIPDFAKVAEP 682
++V+YLGH ++ +G+ E K + P ++ L++FL ++RKFI +FA++A
Sbjct: 1125 KEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASS 1184
Query: 683 LTRLTKKSYVWEW 721
LT L W W
Sbjct: 1185 LTSLISAKVAWIW 1197
Score = 36.7 bits (81), Expect = 0.024
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 354 LKDVTVLAYFDDILVISDSYQRHLSDLRAVFDRLRLFKLRANRDKCVFAREK 509
L V Y DD+L+ S ++HL D++ R+R ++ KC A+++
Sbjct: 1075 LLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKE 1126
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 68.1 bits (159), Expect = 8e-12
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +1
Query: 7 IIEECESAWSAPTVLVPKANGGYRFCVDYRRLNAVTKGDAYPMPRIDELLQS-TKKRLRD 183
+I E +S WS+P VLV K +G R C+DYR++N V K +A+P+P I+ LQS K+L
Sbjct: 970 VIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYT 1029
Query: 184 EF-L*PSKWLLAVQYQGSG*NGLCQPFGMYRFKRMPFGLKNAP 309
F + W + + + ++ + +PFGL +P
Sbjct: 1030 VFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISP 1072
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 503 RKVKYLGHVISQEGISPDEDKVRAVLDMKEPKCLQHLRTFLQTCSWFRKFIPDFAKVAEP 682
++V+YLGH ++ +G+ E K + P ++ L++FL ++RKFI +FA++A
Sbjct: 1136 KEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASS 1195
Query: 683 LTRLTKKSYVWEW 721
LT L W W
Sbjct: 1196 LTSLISAKVAWIW 1208
Score = 36.7 bits (81), Expect = 0.024
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 354 LKDVTVLAYFDDILVISDSYQRHLSDLRAVFDRLRLFKLRANRDKCVFAREK 509
L V Y DD+L+ S ++HL D++ R+R ++ KC A+++
Sbjct: 1086 LLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKE 1137
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 36.7 bits (81), Expect = 0.024
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +1
Query: 478 IETSASLLEKSQVFGSRDLSGGYISG*RQGTRGIRYEGA*VSSALTHFSSNVFLVSEIYT 657
I T SL E ++F + + G +SG ++GTR + YE ++S L + SN+F +T
Sbjct: 961 IHTKKSL-ESLRLFSTSSRASGVVSGIQEGTRRMAYEWI-MNSLLDAWRSNLFASKPYWT 1018
Query: 658 GLCKGS*TTHTL 693
KG T TL
Sbjct: 1019 QSFKGQSTFSTL 1030
>U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical
protein T16A1.8 protein.
Length = 368
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 506 KVKYLGHVISQEGISPDEDKVRAVLDMKEPK 598
KV+ +++S++GI D +K++AV +PK
Sbjct: 315 KVEVRTYIVSKDGIQTDPEKIKAVSKFPQPK 345
>AF025465-3|AAB71027.2| 380|Caenorhabditis elegans Hypothetical
protein K02E7.6 protein.
Length = 380
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 801 CNPLVLX*ETWSTLLKRFQTPYFAPKLHSQTYDFLVKRVSGSATFAK 661
CN ++ +STL+K+++ Y + + VKR+ G TF K
Sbjct: 297 CNKIMEKLTYYSTLVKQWEKHYLNDRPYWSNLKNYVKRIQGEGTFDK 343
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 587 KEPKCLQHLRTFLQTCSWFRKFI--PDFAKVAEPLTRLTKK 703
K C+QHLR+ ++ W+ K + P K+ +P+ L KK
Sbjct: 682 KAKACVQHLRSLVKKRDWYYKQLDEPSILKL-DPILELLKK 721
>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
protein Y67D8A.1 protein.
Length = 1020
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 623 EKCVSAEDT*APSYLIPRVPCLHPEIYPPERSRDPNT*LFS 501
+KC+ A++T Y++P C+ I ER + +T L++
Sbjct: 153 QKCLVADETVPGGYIVPECYCVDEFIMDKEREQPNSTELYA 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,242,603
Number of Sequences: 27780
Number of extensions: 421279
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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