Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0628
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    48   2e-06
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    34   0.031
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    32   0.093
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.22 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.6  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    27   4.6  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   6.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.1  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   8.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   8.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   8.1  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = -2

Query: 697 LPRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLPTVSLWTGRSGGALIAA 518
           +P+ P+AP  P     PS H+ P  P+ P  P +P+ P AP +P       R    ++  
Sbjct: 514 VPQPPAAPVVPE---APSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPE 570

Query: 517 TSYLPLGPVFPGKPS*PGIP 458
              +P  PV P  P  P +P
Sbjct: 571 ALSVPQPPVAPVAPEVPSVP 590



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 26/80 (32%), Positives = 36/80 (45%)
 Frame = -2

Query: 697 LPRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLPTVSLWTGRSGGALIAA 518
           +P+ P AP AP  P +P    +PV P  P  P  P  P AP +P+V     R    ++  
Sbjct: 574 VPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSV---PQRPAVPVVPE 630

Query: 517 TSYLPLGPVFPGKPS*PGIP 458
              +P  P  P  P  P +P
Sbjct: 631 APSVPQPPAAPVVPEVPSVP 650



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 28/94 (29%), Positives = 37/94 (39%)
 Frame = -2

Query: 739 HQXLYLQVDQLVHLLPRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLPTV 560
           HQ     V   V   P+ P+AP  P  P +P     PV P     P  P  P AP +P+V
Sbjct: 530 HQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSV 589

Query: 559 SLWTGRSGGALIAATSYLPLGPVFPGKPS*PGIP 458
                     ++     +P  PV P  P  P +P
Sbjct: 590 ---PQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 27/84 (32%), Positives = 34/84 (40%)
 Frame = -2

Query: 706 VHLLPRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLPTVSLWTGRSGGAL 527
           VH  P +P AP  P  P  P+A   PV P  P  P  P  P  P   +V           
Sbjct: 529 VHQPPAAPVAPEVPSAPQRPAA---PVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585

Query: 526 IAATSYLPLGPVFPGKPS*PGIPL 455
           + +    P+ PV P  PS P  P+
Sbjct: 586 VPSVPQPPVAPVVPEAPSVPQPPV 609



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 697 LPRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLPTV 560
           +P+ P+AP  P  P +P     PV P  P  P  P  P  P +P+V
Sbjct: 634 VPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSV 679



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 697 LPRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLPTV 560
           +P+ P+ P  P  P +P    +PV P  P  P  P  P  P  P+V
Sbjct: 619 VPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSV 664



 Score = 33.1 bits (72), Expect = 0.053
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -2

Query: 694 PRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLP 566
           P  P  P AP  P  P+A   P  P  P  P  P  P APS+P
Sbjct: 623 PAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVP 665


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -2

Query: 694  PRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTAPSLPTVSLWTGRSGGALIAAT 515
            P  P APG       PS+  +P  P+  + P  P  P    +P+V+     S     A +
Sbjct: 1457 PVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPS 1516

Query: 514  SYLP 503
            S LP
Sbjct: 1517 STLP 1520


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 615 DLLAPSRLVDQLLHRCPRSPFGPEDPGEHSLQRPPIYPWVQYFQANRRN 469
           D+LAP  L  Q+L + P  PF P      S+  PP    V    +N  N
Sbjct: 48  DMLAPKPLAGQVLSKSPLPPFSPSKIMNRSISVPPTNISVPQISSNPLN 96


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 121 PGSQGEPGTPGIEGPAGHKGEKGEAGFDGQKG--ESGPRGYDGNVG 252
           PG  G  G  G  G   H G  G  GF G  G  E GP G+ G  G
Sbjct: 202 PGPGGFGGFGGFGGEGHHHG--GHGGFGGGPGGFEGGPGGFGGGPG 245


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 2    VQVLGDLLVPLVPEVMRAHKDLKALMEGXETEVKQDQWAPQEVKVNPE 145
            +++ G +L  LVP  +  +       E  E E K+++    EV + PE
Sbjct: 2179 LRITGSVLFALVPPALEKYNLENQKKEILENESKEEETRQPEVNIQPE 2226


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 286 PSSPFSPLGPTVRHFHRIHEAQTLLFDH 203
           P  P  P GPT RH +R  E     F H
Sbjct: 133 PILPKLPCGPTQRHIYRFKEIPQQNFTH 160


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 509 FTLGSSISRQTVVTRHSFISLFSGKTYFSWNTRCTKGGISWYASKTG 369
           +T  SS     V    S ISL   K    WN +  +GGI+W+   TG
Sbjct: 119 YTTNSSRRDHYVSRAESIISLIINK---GWNQQ--RGGIAWHTRTTG 160


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 107 DQWAPQEVKVNPEHQELRVLRDIKVKREKLVLMVKKESLGLVDTM 241
           +Q A  EV    E   L  LRD ++  E+L    K + L LVD +
Sbjct: 182 EQMADDEVLRLREQMRLAALRDAELNSEQLPATEKLKMLPLVDAV 226


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 685  PSAPGAPGKPCMPSAHRSPVXPIGPIG-PLSPRGPTAPSLPTVS 557
            P    A G P +P    +P  P   +G P  P   TAP +PT S
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 512 LFTLGSSISRQTVVTRHSF-ISLFSGKTYFSWNTRCTKGGISW 387
           LFT+G  +  +   +  +  I++ +G   FSW    T G I W
Sbjct: 298 LFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQW 340


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 700 LLPRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLS 596
           ++  SPSA  +PG    P+A R+P  P G    +S
Sbjct: 830 IMKDSPSAHASPGAKTSPNASRAP-EPTGGTNSIS 863


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = -2

Query: 694 PRSPSAPGAPGKPCMPSAHRSPVXPIGPIGPLSPRGPTA--PSLPTVSLWTGRSG 536
           P     P  PG P MP+ + S   P+ P G   P G  A  P  P V    G  G
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQ-PPMVPPGMALPPGMPAPFPGYPAVPAMPGIPG 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,790
Number of Sequences: 5004
Number of extensions: 73887
Number of successful extensions: 233
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)