Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0627
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   2.1  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   6.4  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   6.4  

>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 499 VIKIKQ*GTEALRSRWNRGRPLRFGPHVSRWVP 401
           V+++K+   E +   WN   P R  P + RW P
Sbjct: 340 VLQLKRDELENVYKAWNIKHPQRVNPKLLRWTP 372


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 557 ELIHPSMQNKXTSGMTNTLCNQNQTVRYRSTAFPLEPR 444
           E   P +++   +GM  T+CN    +   ++ FP  PR
Sbjct: 262 EYFGPGVESLSCTGM-GTICNMGAEIGATTSIFPFNPR 298


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 94  LPTRIYK*FLRY*HTVSIIDT 32
           +PT +YK F  Y H  S +DT
Sbjct: 123 IPTAVYKSFSNYDHAKSFLDT 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,338
Number of Sequences: 5004
Number of extensions: 50814
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)