Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0627
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)                  29   5.1  
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              28   6.8  
SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                28   6.8  

>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 614 HLCCRCLWVPVST*QQTGCELIHPSMQNKXTSGMTNTLCNQNQTVRYRSTAFPLEPR 444
           H  CR L   + T  +T C  + P ++N  T   T     + +TV+ R T  P  PR
Sbjct: 299 HCSCRPLICEIPT--KTACPTLRPPVRNTNTRQTTTHWVTRQRTVKVRETTTPHTPR 353


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 356  PGHCIFSHGTCLWQNAVTHKKHDN 285
            PG C F  GTC W N       DN
Sbjct: 2087 PGDCNFETGTCTWFNTPASSNTDN 2110


>SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 190 LQCLDDGGAEHDLPGETLRRRPRNL 264
           +Q L+  G EHDLPGE ++ R +NL
Sbjct: 310 VQELNAFGREHDLPGEGIQLRGQNL 334


>SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)
          Length = 624

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 211 GAEHDLPGETLRRRPRNL 264
           G EHDLPGE ++ R +NL
Sbjct: 112 GHEHDLPGEGIQHRSQNL 129


>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 103 YYLNYSGSYRRRCSGYNFNWSRLYSDPEDLQCLDDGGAEHDLPGETLRRR 252
           Y+  Y  SYR+R + Y  NW +L      L+    G  E   P E L ++
Sbjct: 216 YHNLYGLSYRQRLNVYKENWEKLAVHFGILKWASTGNLEKFSPAEILYKK 265


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 172 YSDPEDLQCLDDGGAEHDLPGETL 243
           Y+D ED++ +DD   +HD+P + L
Sbjct: 406 YNDEEDVKSVDDSFDKHDIPYDVL 429


>SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 474

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 353 GHCIFSHGTCLWQNAVTHK 297
           G C F++G CLW+N +  K
Sbjct: 349 GFCDFNNGFCLWENDINDK 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,784,469
Number of Sequences: 59808
Number of extensions: 423691
Number of successful extensions: 1181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)