Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0627
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.73 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 544 HLCKIXKLPG*RIHCVIKIKQ*GTEALRSRWNRGRPLRFGP 422
           H CK+ ++P      ++++K+   +   S W   R L   P
Sbjct: 100 HGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRFLELAP 140


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -1

Query: 530 KXTSGMTNTLCNQNQTVRYRSTAFPLEPRAAVKVWTSCLEVGAXSHLVMSIVPSSH*SP 354
           + T G+T+ L    Q  + + +  P+    A+ VW S   V     L+   V +++  P
Sbjct: 245 RVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNYMGP 303


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 347 CIFSHGTCLWQNAVTH 300
           C F      W+NAV H
Sbjct: 539 CYFRRNAATWKNAVRH 554


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 518 GMTNTLCNQNQTVRYRSTAFPLEPRAAVKVWTS-CL 414
           G+T  L    QT    ++  P+    A+ +WT  CL
Sbjct: 277 GVTTLLTMATQTSGINASLPPVSYTKAIDIWTGVCL 312


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 518 GMTNTLCNQNQTVRYRSTAFPLEPRAAVKVWTS-CL 414
           G+T  L    QT    ++  P+    A+ +WT  CL
Sbjct: 277 GVTTLLTMATQTSGINASLPPVSYTKAIDIWTGVCL 312


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 112 NYSGSYRRRCSGYNFNWSRL 171
           NY+ +Y    + YN N+ +L
Sbjct: 93  NYNNNYNNYNNNYNTNYKKL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,811
Number of Sequences: 438
Number of extensions: 3557
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)