Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0626
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    24   6.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   6.9  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    24   9.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   9.1  

>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 114 KQRQLHVGFPRLEVALKRGNV 52
           K RQLH+G P+  + L   N+
Sbjct: 72  KARQLHIGRPKFNIELFTKNI 92


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 18  PGTSPLRSLHQRHSHA*GQPPSVGSRREVGAV 113
           P   P  S+HQ  S    QPPS  S    G V
Sbjct: 39  PNLPPPFSVHQLQSFVPPQPPSSSSPSTTGTV 70


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 64  LEGNLQAWEADVKLALFAXDSAYFASSN 147
           L  N+Q + +  +L  FA +SAYF + +
Sbjct: 160 LASNVQIFNSSNELEQFAAESAYFTTKH 187


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 67  QAWECRWCRERRGLVPGPRAEF 2
           Q W  RW + R G V  P A F
Sbjct: 372 QNWLYRWDKRRHGGVARPEARF 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,239,025
Number of Sequences: 5004
Number of extensions: 16672
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)