Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0626
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   0.83 
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   0.83 
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   0.83 
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa...    27   5.9  
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as...    27   5.9  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
           protein K07E12.1b protein.
          Length = 12268

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 11  TRSWHQSSTLSTPTTFPRLRATSKRGKPT*SWRCLXXTAPTSRPLISPLRP 163
           T  W   S ++ P T   L  T+   +P  +W+ L    PT    I  LRP
Sbjct: 348 TVRWEPPSIINRPITTYTLYYTNNPQQPVKNWKKLEVKEPTREVAIPDLRP 398


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
           protein K07E12.1a protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 11  TRSWHQSSTLSTPTTFPRLRATSKRGKPT*SWRCLXXTAPTSRPLISPLRP 163
           T  W   S ++ P T   L  T+   +P  +W+ L    PT    I  LRP
Sbjct: 411 TVRWEPPSIINRPITTYTLYYTNNPQQPVKNWKKLEVKEPTREVAIPDLRP 461


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
           protein.
          Length = 13100

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 11  TRSWHQSSTLSTPTTFPRLRATSKRGKPT*SWRCLXXTAPTSRPLISPLRP 163
           T  W   S ++ P T   L  T+   +P  +W+ L    PT    I  LRP
Sbjct: 411 TVRWEPPSIINRPITTYTLYYTNNPQQPVKNWKKLEVKEPTREVAIPDLRP 461


>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
            protein kinase protein.
          Length = 1425

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 111  QRQLHVGFPRLEVALKR 61
            +R LH  FPR++VAL+R
Sbjct: 1137 ERSLHSTFPRIQVALRR 1153


>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
            (death-associated protein)kinase homolog protein 1
            protein.
          Length = 1425

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 111  QRQLHVGFPRLEVALKR 61
            +R LH  FPR++VAL+R
Sbjct: 1137 ERSLHSTFPRIQVALRR 1153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,042,260
Number of Sequences: 27780
Number of extensions: 102152
Number of successful extensions: 242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)