Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0626
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45573.1 68418.m05598 hypothetical protein                          27   4.1  
At5g01170.1 68418.m00021 glycine-rich protein predicted proteins...    27   4.1  
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr...    26   9.6  
At4g38950.1 68417.m05519 kinesin motor family protein similar to...    26   9.6  
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati...    26   9.6  

>At5g45573.1 68418.m05598 hypothetical protein
          Length = 195

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 110 CLXXTAPTSRPLISPLRPFRGCRG 181
           C    +PTSRP IS L+  RG +G
Sbjct: 47  CCLQGSPTSRPYISALQNIRGEKG 70


>At5g01170.1 68418.m00021 glycine-rich protein predicted proteins,
           Arabidopsis thaliana
          Length = 568

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -3

Query: 375 GHPQTPVDIDSQVSDTGPKLXINSTETELXLGRL 274
           G PQ+ + +  + SDT P+  +++    + +GR+
Sbjct: 256 GRPQSEIGVGRRSSDTDPRFSLDAGRFSVDIGRI 289


>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
           protein (AALP) identical to AALP protein GI:7230640 from
           [Arabidopsis thaliana]; similar to barley aleurain
          Length = 358

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 143 LISPLRPFRGCRGCWTY 193
           ++SP++   GC  CWT+
Sbjct: 152 IVSPVKDQGGCGSCWTF 168


>At4g38950.1 68417.m05519 kinesin motor family protein similar to
           AtNACK1 kinesin-like protein (GI:19979627) [Arabidopsis
           thaliana]; similar to kinesin-like protein NACK1
           (GI:19570247) [Nicotiana tabacum]
          Length = 836

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 14  RSWHQSSTLSTPTTFPRLRATSKRGKP 94
           RSW++  T+S P+T P    T   G+P
Sbjct: 545 RSWNRRETVSGPSTPPENIGTGFLGRP 571


>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
           (COX6b) nearly identical to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353
          Length = 191

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = -2

Query: 73  CPQAWECRWCRER-RGLVPGP 14
           CP  W  RW  +R  G  PGP
Sbjct: 169 CPSEWVDRWNEQRENGTFPGP 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,777,781
Number of Sequences: 28952
Number of extensions: 95614
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)