Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0625
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    29   0.53 
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   3.7  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 224 KYKKQSTNKKYWQLNSF*TQKSGFSNITRAINPQ 325
           KY+ Q T+ K W L +F T  S   N+T A N Q
Sbjct: 182 KYRIQLTDGKIWFLYAFPTSSSSTFNLTLASNSQ 215


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 484 VYNNGHEVIIVKHKIFLGSS 425
           +Y+  HEV+  KH++ LGSS
Sbjct: 526 IYDRYHEVLSSKHRVGLGSS 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,908
Number of Sequences: 5004
Number of extensions: 53251
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)