Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0625
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14346| Best HMM Match : DUF286 (HMM E-Value=4.9)                    32   0.43 
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       30   2.3  
SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         29   5.3  

>SB_14346| Best HMM Match : DUF286 (HMM E-Value=4.9)
          Length = 223

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 170 NEYIYRNDHTCLLRTVIEIVTITFYFNVVLDVFVIYQ 60
           N Y   N H C L   + I T+T  F +  D+FV+ Q
Sbjct: 11  NAYTLTNTHDCKLSGAVHIYTLTKCFAIRKDIFVVVQ 47


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
 Frame = -2

Query: 534 VFFYLGPLTFLSLCFA*STTMVTRSSLLNIKSS---*AARIFTLASFL-ILVINIQCIIY 367
           +FF+L  L ++  C A +++    SSL    SS    ++   T +SF  I +I +  II 
Sbjct: 206 LFFFLSFLCYVKCCSASASSSTASSSLSTSSSSSSTSSSSSLTSSSFTNINIIIVNIIII 265

Query: 366 ASNLLISYIYNLYVCGLMALVILL 295
             N +I  I N+ +   + ++I++
Sbjct: 266 IINNIIIIIVNIIINNNIDIIIII 289


>SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -2

Query: 723 IPPKNGQSEKPLN--NCILSKIQNIPXATNY 637
           + P  G++EKPL    CI+++I++IP  +N+
Sbjct: 486 LSPGYGKTEKPLGYRGCIIARIRSIPFKSNF 516


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 170 NEYIYRNDHTCLLRTVIEIVTITFYFNVVLDV 75
           N YI  N H C LR  + I T+T    ++ DV
Sbjct: 55  NAYILTNTHDCKLRGAVRIYTLTSKKALIRDV 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,848,623
Number of Sequences: 59808
Number of extensions: 333581
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)