Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0624
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   0.61 
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    26   5.6  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 154 NYLSKEICFAMRVRILLLLKYFDKFAVVFYVSI 252
           NY++  IC  +   IL+LL YF     VFY S+
Sbjct: 162 NYIAFPICLFVINHILILLGYFQCSYSVFYASV 194


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +1

Query: 457 FPNQLKE*REHSLLIDINSYNKYVRQLIRTVRV*NITAIIRLYRRNVEENXRQFNDIMIL 636
           FP+  K     +L   + S   Y+  L+R V++ N+ A++++   N+  N  +  +  +L
Sbjct: 113 FPDDRKLQLYGALFFLLQSEPAYIASLVRRVKLFNMDALLQIVMFNIYGNQYESREEHLL 172

Query: 637 FAXKKNHLT 663
            +  +  LT
Sbjct: 173 LSLFQMVLT 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,923
Number of Sequences: 5004
Number of extensions: 49848
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)